| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,264,360 – 3,264,424 |
| Length | 64 |
| Max. P | 0.562829 |
| Location | 3,264,360 – 3,264,424 |
|---|---|
| Length | 64 |
| Sequences | 3 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 77.17 |
| Shannon entropy | 0.30132 |
| G+C content | 0.44271 |
| Mean single sequence MFE | -16.67 |
| Consensus MFE | -13.14 |
| Energy contribution | -12.70 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.562829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3264360 64 + 24543557 AGAGCUUCGAGUCUGGCAACUAUGGUCUAAAGUCUAUGGUCUAUAGUAUAGUGGCAGCAAGGCA ...((((...(.(((.(((((((((.(((.......))).)))))))....)).)))).)))). ( -16.00, z-score = -0.32, R) >droEre2.scaffold_4784 5946835 56 + 25762168 CGAGCUUAGACUCUAGCAACCAUGGUCUAUGGUCUAUGGUUUAUAGUAUUGAGGCA-------- ...((((.((..(((..((((((((.(....).))))))))..)))..)).)))).-------- ( -17.20, z-score = -2.05, R) >droYak2.chr3L 3809603 56 + 24197627 ACAGCUCAGAGUCUAGCAACUAUGGUCUAUGGUCUAUGGUCUCUAGUAUUGAGGCA-------- ....(((((...((((..(((((((.(....).)))))))..))))..)))))...-------- ( -16.80, z-score = -1.29, R) >consensus AGAGCUUAGAGUCUAGCAACUAUGGUCUAUGGUCUAUGGUCUAUAGUAUUGAGGCA________ ...(((......(((...(((((((.(....).)))))))...)))......)))......... (-13.14 = -12.70 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:14 2011