| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,263,988 – 3,264,056 |
| Length | 68 |
| Max. P | 0.656643 |
| Location | 3,263,988 – 3,264,056 |
|---|---|
| Length | 68 |
| Sequences | 11 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 79.57 |
| Shannon entropy | 0.47051 |
| G+C content | 0.42733 |
| Mean single sequence MFE | -12.76 |
| Consensus MFE | -8.95 |
| Energy contribution | -9.80 |
| Covariance contribution | 0.85 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.86 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3263988 68 + 24543557 --CCAAAAUGC-CAUAAAACAUUGCGCCUUCGGUUACGCGUCAGAAAUUAACAAAUUAGUGCGAUGUUUCA --.........-....(((((((((((.....((((..(....)....))))......))))))))))).. ( -13.50, z-score = -1.03, R) >droSim1.chr3L 2799632 68 + 22553184 --CCAAAAUGC-CAUAAAACAUUGCGCCCUCGGUUACGCGUCAGAAAUUAACAAAUUAGUGCGAUGUUUCG --.........-....(((((((((((.....((((..(....)....))))......))))))))))).. ( -13.50, z-score = -1.13, R) >droSec1.super_2 3257460 68 + 7591821 --CCAAAAUGC-CAUAAAACAUUGCGCCCUCGGUUACGCGUCAGAAAUUAACAAAUUAGUGCGAUGUUUCG --.........-....(((((((((((.....((((..(....)....))))......))))))))))).. ( -13.50, z-score = -1.13, R) >droYak2.chr3L 3809151 68 + 24197627 --CCAAAAUGC-CAUAAAACAUUGCGCCUUCGGUUACGCGUCAGAAAUUAACAAAUUAGUGCGAUGUUUCG --.........-....(((((((((((.....((((..(....)....))))......))))))))))).. ( -13.50, z-score = -0.98, R) >droEre2.scaffold_4784 5946468 68 + 25762168 --CCAAAAUGC-CAUAAAACAUUGCGCCCUCGGUUACGCGUCAGAAAUUAACAAAUUAGUGCGAUGUUUCG --.........-....(((((((((((.....((((..(....)....))))......))))))))))).. ( -13.50, z-score = -1.13, R) >droAna3.scaffold_13337 7568975 68 + 23293914 --CCGAAAAGC-CAUAAAACAUUGCGCCUUCGGUUACGCGUCAGAAAUUAACAAAUUAGUGCGAUGUUUCG --.........-....(((((((((((.....((((..(....)....))))......))))))))))).. ( -13.50, z-score = -0.76, R) >dp4.chrXR_group8 5926422 71 - 9212921 CCAGAAACCGCUCAUAAAACAUUGCGCCUUCGGUUACGCGUCAGAAAUUAACAAAUUAGUGCGAUGUUUCG ................(((((((((((.....((((..(....)....))))......))))))))))).. ( -13.50, z-score = -0.64, R) >droWil1.scaffold_180697 3969611 55 + 4168966 ----------------UGAAAAUGCCUUUUUCCUUUGUCCUUUGACAUACACACACACGCACACAGUGCCA ----------------.(((((.....)))))...((((....))))...........((((...)))).. ( -6.70, z-score = -0.63, R) >droMoj3.scaffold_6680 22814979 68 - 24764193 --AAAAAAUGC-CAUCAAACAUUGCGCCUUCGGUUACGCGUCGAAAAUUAACAAAUUAGUGCGAUGUUUCG --.........-....(((((((((((.(((((.......)))))((((....)))).))))))))))).. ( -13.90, z-score = -0.91, R) >droVir3.scaffold_12758 80727 66 - 972128 ----AAGGGGC-CAUCAAACAUUGCGCCCUCGGUUACACGUCAAAAGCUUACAAAUUAGUGCGAAGUUUCG ----..(((((-((........)).)))))((......))....((((((.((......))..)))))).. ( -10.70, z-score = 0.70, R) >droGri2.scaffold_15110 619817 65 + 24565398 ----AUAGGGC-CAUCAAACAUUGCGCCCUCGGUUACGCGUCACAA-UUAACAAAUUAGUUCGUUGUUUCG ----..(((((-((........)).)))))........((..((((-(.(((......))).)))))..)) ( -14.60, z-score = -1.87, R) >consensus __CCAAAAUGC_CAUAAAACAUUGCGCCUUCGGUUACGCGUCAGAAAUUAACAAAUUAGUGCGAUGUUUCG ................(((((((((((.....((((............))))......))))))))))).. ( -8.95 = -9.80 + 0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:13 2011