| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,197,383 – 3,197,476 |
| Length | 93 |
| Max. P | 0.876541 |
| Location | 3,197,383 – 3,197,476 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 76.98 |
| Shannon entropy | 0.42480 |
| G+C content | 0.51743 |
| Mean single sequence MFE | -29.96 |
| Consensus MFE | -16.96 |
| Energy contribution | -18.88 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.876541 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3197383 93 - 24543557 GAGCAAGGGGAAAUCAAAGGCCGGCGUUGAAAGUGCGAA---AAACGAUGCAAAAGCGAUGCCGGCUAAGGAAGCCAGUCCGAUUUCAGUCGAUAA--- ......((.((((((...(((((((((((....((((..---......))))....)))))))))))..(((......)))))))))..)).....--- ( -33.60, z-score = -3.44, R) >droSim1.chr3L 2727472 93 - 22553184 GAGCAAGGGGAAAUCAAAGGCCGCCGUUGAAAGUGCGAA---GAACGACGCAAAAUCGACGCCGGCUAAGGAAGCCAGUCCGAUUUCAGUCGAUAA--- ......((.((((((...(((((.((((((...((((..---......))))...)))))).)))))..(((......)))))))))..)).....--- ( -31.50, z-score = -2.41, R) >droSec1.super_2 3190583 93 - 7591821 GAGCAAGGGGAAAUCAAAGGCCGCCGUUGAAAGUGCGAA---GAACGACGCAAAAUCGACGCCGGCUAAGGAAGCCAGUCCGAUUUCAGUCGAUAA--- ......((.((((((...(((((.((((((...((((..---......))))...)))))).)))))..(((......)))))))))..)).....--- ( -31.50, z-score = -2.41, R) >droYak2.chr3L 3742711 93 - 24197627 GAACAAGGGGAAAUCAAAGGCCGCCGUUGAAAGUGCGAA---AAGCGAUGCAAAAUCGACGCCGGCUAAGGAAGCCAGUCCGAUUUCAGUCGACAA--- ......((.((((((...(((((.((((((...((((..---......))))...)))))).)))))..(((......)))))))))..)).....--- ( -29.20, z-score = -1.84, R) >droEre2.scaffold_4784 5880019 93 - 25762168 GAACAAGGGAAAAUCAAAGGCCGCCGUUGAAAGUGCGAA---AAACGUUGCUAAAUCGACGCCGGCUAAGGAACCCAGUCCGAUUUCAGUCGAUAA--- ......(((....((...(((((.((((((....((((.---.....))))....)))))).)))))...)).)))....((((....))))....--- ( -27.10, z-score = -1.83, R) >anoGam1.chr2R 5856371 99 - 62725911 GAAGCCGGGCAAAGGUGGUGGUACCGGCAAAAAUUCAAAAGCAAGUAAAGAUGAGGUCAAACCGGCCCCAGCAGCCGGUCCUGUGCUGGUAGACGGAAA ..((((((((...((((.(((..((((......((((..............))))......))))..))).)).)).).)))).)))............ ( -26.84, z-score = 0.75, R) >consensus GAACAAGGGGAAAUCAAAGGCCGCCGUUGAAAGUGCGAA___AAACGAUGCAAAAUCGACGCCGGCUAAGGAAGCCAGUCCGAUUUCAGUCGAUAA___ .........((((((...(((((.((((((...((((...........))))...)))))).)))))..(((......)))))))))............ (-16.96 = -18.88 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:05 2011