| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,166,693 – 3,166,809 |
| Length | 116 |
| Max. P | 0.878578 |
| Location | 3,166,693 – 3,166,809 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.61 |
| Shannon entropy | 0.33133 |
| G+C content | 0.42821 |
| Mean single sequence MFE | -25.37 |
| Consensus MFE | -16.47 |
| Energy contribution | -17.88 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.878578 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3166693 116 - 24543557 ----UCAGCUGAAUCAGCUUCGAUUUGGUUUACACUCGAUCGAAGCAAAUUCGUUAAUGCAAUUAGCAUCUGCUGGCGUCCAGGUUCUACUUAAACUCUCCCAUUUACCAGUCCAAUUCC ----...(((((((..(((((((((.(((....))).)))))))))..))))((..((((.....))))..)).))).....(((.....................)))........... ( -26.70, z-score = -2.31, R) >droAna3.scaffold_13337 14343548 107 + 23293914 CCAAGCUGCUGAAUCAACUUCGAAUUGGUUUAUACUUGAUUUCGGCCAACCCGAUAAUGAAAUUAGCAAUCGAAUACGUC---ACUAUACCGACGAUUGCUAAUUUUCCG---------- .((((.((.((((((((.......))))))))))))))...((((.....))))....((((((((((((((....)(((---........))))))))))))))))...---------- ( -25.90, z-score = -3.44, R) >droEre2.scaffold_4784 3175664 116 - 25762168 ----UCAGCUGAAUCGGCUUCGAUUUGGUUUACACUCGAUCGAAGCAAAUUCGUUAAUGCAAUUAGCAUCCGCUGGCGUCCAGGUUCUACUUAAACUCGCCCAUUUACCAGUCGAAUUCC ----((.(((((((..(((((((((.(((....))).)))))))))..))))((..((((.....))))..)).((((...(((.....))).....))))........))).))..... ( -30.10, z-score = -2.08, R) >droYak2.chr3L 15422381 115 + 24197627 ----UCAGCUAAAUCAGCUUCGAUUUGGUUUACACUCGAUUGAAGCAAAUUCGUUAAUGCAAUUAGCAUCCACUGGCGUCCAGAUUCUACUUAAACUC-CCCAUUUACCAGUCCGAUUCC ----...(((((....(((((((((.(((....))).)))))))))......((....))..))))).....((((...))))...............-..................... ( -21.60, z-score = -1.57, R) >droSec1.super_2 3160121 116 - 7591821 ----UCAGCUGAAUCAGCUUCGAUUUGGUUUACACUCGAUCGAAGCAAAUUCGUUAAUGCAAUUAGCAUCCGCUGGCGUCCAGGUUCUACUUAAACUCUCCCAUUUACCAGUCCAAUUCC ----(((((.((((..(((((((((.(((....))).)))))))))..))))....((((.....))))..)))))......(((.....................)))........... ( -26.90, z-score = -2.55, R) >droSim1.chr3L 2694933 116 - 22553184 ----UCAGCUGAAUCAGCUUCGAUUUGGUUUACACUCGAUAGAAGCAAAUUCGUUAAUGCAAUUAGCAUCCGCUGGCGUCCAGGUUCUACUUAAACUCUCUCAUUUACCAGUCCAAUUCC ----(((((.((((..(((((.(((.(((....))).))).)))))..))))....((((.....))))..)))))......(((.....................)))........... ( -21.00, z-score = -0.43, R) >consensus ____UCAGCUGAAUCAGCUUCGAUUUGGUUUACACUCGAUCGAAGCAAAUUCGUUAAUGCAAUUAGCAUCCGCUGGCGUCCAGGUUCUACUUAAACUCUCCCAUUUACCAGUCCAAUUCC .....((((.((((..(((((((((.(((....))).)))))))))..))))((((((...))))))....))))............................................. (-16.47 = -17.88 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:58 2011