| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,252,453 – 4,252,556 |
| Length | 103 |
| Max. P | 0.886370 |
| Location | 4,252,453 – 4,252,556 |
|---|---|
| Length | 103 |
| Sequences | 8 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 77.39 |
| Shannon entropy | 0.43283 |
| G+C content | 0.37548 |
| Mean single sequence MFE | -28.75 |
| Consensus MFE | -13.18 |
| Energy contribution | -13.97 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.886370 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4252453 103 + 23011544 -GUGCAUAUGGAAUGUUACUGCGAAUUCG--------AAUGCC---AUCGUUUUAUGUGCACUUCACAUGCAAUUGCAGAAUUAAUUGCAUACUCUCAGCUGGUCUGCUGACUUU--- -((((((((((((((......((....))--------......---..)))))))))))))).....(((((((((......)))))))))....(((((......)))))....--- ( -32.44, z-score = -3.00, R) >droWil1.scaffold_180772 1949161 117 + 8906247 -GCAUAUAUCAAAUUUUACUGCGAAUUUGAAAACAACAAAAACAAAAAUCUGAAAUGUGCAUUUCACAUGCAAUUGCAAAAUUAAUUGCAUACUUUUGGGUUCUCUUACGGUUUCCCU -((((((.((((((((......))))))))............((......))..)))))).......(((((((((......)))))))))......(((..((.....))...))). ( -21.70, z-score = -1.84, R) >droPer1.super_8 320316 105 - 3966273 AUGGAAUAUGGAAU-UUUCUGCGAAUUCGCAUCGGAUAGUAUCGU-AUCGUUUUAUGUGCAUUUCACAUGCAAUUGUAGAAUUAAUUGCAUACUUUUAUGUGACUUU----------- ..(..((((((((.-....((((....))))..(((..(((.(((-(......)))))))..)))..(((((((((......)))))))))..))))))))..)...----------- ( -22.50, z-score = -0.71, R) >dp4.chr4_group2 242969 105 + 1235136 AUGGAAUAUGGAAU-UUUCUGCGAAUUCGCAUCGGAUAGUAUCGU-AUCGUUUUAUGUGCAUUUCACAUGCAAUUGUAGAAUUAAUUGCAUACUUUUAUGUGACUUU----------- ..(..((((((((.-....((((....))))..(((..(((.(((-(......)))))))..)))..(((((((((......)))))))))..))))))))..)...----------- ( -22.50, z-score = -0.71, R) >droSim1.chr2L 4172945 103 + 22036055 -GUGCAUAUGGAAUGUUACUGCGAAUUCG--------AAUGCC---AUCGUUUUAUGUGCACUUCACAUGCAAUUGCAGAAUUAAUUGCAUACUCUCAGCUGGUCGGCUGACUUU--- -((((((((((((((......((....))--------......---..)))))))))))))).....(((((((((......)))))))))....((((((....))))))....--- ( -33.54, z-score = -3.11, R) >droSec1.super_5 2350613 103 + 5866729 -GUGCAUAUGGAAUGUUACUGCGAAUUCG--------AAUGCC---AUCGUUUUAUGUGCACUUCACAUGCAAUUGCAGAAUUAAUUGCAUACUCUCAGCUGGUCUGCUGACUUU--- -((((((((((((((......((....))--------......---..)))))))))))))).....(((((((((......)))))))))....(((((......)))))....--- ( -32.44, z-score = -3.00, R) >droYak2.chr2L 4280117 103 + 22324452 -GUGCAUAUGGAAUGUUACUGCGAAUUCG--------AAUGCC---AUCGUUUUAUGUGCACUUCACAUGCAAUUGCAGAAUUAAUUGCAUACUCUCAGCUGCUCUGCUGACUUA--- -((((((((((((((......((....))--------......---..)))))))))))))).....(((((((((......)))))))))....(((((......)))))....--- ( -32.44, z-score = -3.20, R) >droEre2.scaffold_4929 4328872 103 + 26641161 -GUGCAUAUGGAAUGUUACUGCGAAUUCG--------AAUGCC---AUCGUUUUAUGUGCACUUCACAUGCAAUUGCAGAAUUAAUUGCAUACUCUCAGCUGGUCUGCUGACUUA--- -((((((((((((((......((....))--------......---..)))))))))))))).....(((((((((......)))))))))....(((((......)))))....--- ( -32.44, z-score = -2.95, R) >consensus _GUGCAUAUGGAAUGUUACUGCGAAUUCG________AAUGCC___AUCGUUUUAUGUGCACUUCACAUGCAAUUGCAGAAUUAAUUGCAUACUCUCAGCUGGUCUGCUGACUUU___ ...(((((((((((...................................))))))))))).......(((((((((......)))))))))........................... (-13.18 = -13.97 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:48 2011