| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,152,370 – 3,152,426 |
| Length | 56 |
| Max. P | 0.757598 |
| Location | 3,152,370 – 3,152,426 |
|---|---|
| Length | 56 |
| Sequences | 3 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.41071 |
| Mean single sequence MFE | -11.70 |
| Consensus MFE | -11.70 |
| Energy contribution | -11.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.19 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.757598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3152370 56 - 24543557 GAAUGAAAGAUUGGUUCUGUUACUGGUACUGGUUACUGGGGCAUUUCGAUCGAAAU ........((((((...((((.(..(((.....)))..)))))..))))))..... ( -11.70, z-score = -1.19, R) >droSec1.super_2 3146025 56 - 7591821 GAAUGAAAGAUUGGUUCUGUUACUGGUACUGGUUACUGGGGCAUUUCGAUCGAAAU ........((((((...((((.(..(((.....)))..)))))..))))))..... ( -11.70, z-score = -1.19, R) >droSim1.chr3L 2680350 56 - 22553184 GAAUGAAAGAUUGGUUCUGUUACUGGUACUGGUUACUGGGGCAUUUCGAUCGAAAU ........((((((...((((.(..(((.....)))..)))))..))))))..... ( -11.70, z-score = -1.19, R) >consensus GAAUGAAAGAUUGGUUCUGUUACUGGUACUGGUUACUGGGGCAUUUCGAUCGAAAU ........((((((...((((.(..(((.....)))..)))))..))))))..... (-11.70 = -11.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:56 2011