| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,138,045 – 3,138,153 |
| Length | 108 |
| Max. P | 0.848880 |
| Location | 3,138,045 – 3,138,153 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 74.28 |
| Shannon entropy | 0.42622 |
| G+C content | 0.44578 |
| Mean single sequence MFE | -27.00 |
| Consensus MFE | -17.64 |
| Energy contribution | -17.70 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.848880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3138045 108 - 24543557 CCUUAUGCAAAUUAACUGCACGACUUCCGCUGAUGCAGUUGCACUGUCGUGUUGCAGCUUUUAGUC--------UGCGGUUGUUGCAUUUACAUCGGUCUCUUUCUUUUUGUUGUG ....((((((..((((((((.((((...((....))((((((((......).)))))))...))))--------)))))))))))))).((((.(((...........))).)))) ( -28.80, z-score = -1.67, R) >droSim1.chr3L 2665630 116 - 22553184 CCUUAUGCAAAUUAACUGCACGACUUCCGCUGAUGCAGUUGCACUGUCGUGUUGCAGCUUUUAGUCUGUCCUUUUGCGGUUGUUGCAUUUACAUCGGUCUCGUUCUUUUUGUUGUG ....((((((..((((((((.(((....(((((...((((((((......).))))))).)))))..)))....)))))))))))))).((((.(((...........))).)))) ( -28.00, z-score = -1.01, R) >droSec1.super_2 3131694 116 - 7591821 CCUUAUGCAAAUUAACUGCACGACUUCCGCUGAUGCAGUUGCACUGUCGUGUUGCAGCUUUUAGUCUGUCCUUUUGCGGUUGUUGCAUUUACAUCGGUCUCGUUCUUUUUGUUGUG ....((((((..((((((((.(((....(((((...((((((((......).))))))).)))))..)))....)))))))))))))).((((.(((...........))).)))) ( -28.00, z-score = -1.01, R) >droAna3.scaffold_13337 14315491 95 + 23293914 CCUUAUGCAAAUUAACUGCACGGCUUCCUGUG-UGAUGCAGUCCUGUCGUGUAAUAGUCCUUAUGCCUUGUUGCUUCUUUUGUUGCAGUUGUUGUG-------------------- ......((((..((((((((((((...((((.-....))))....)))))(((((((..(....)..)))))))..........))))))))))).-------------------- ( -23.20, z-score = -2.39, R) >consensus CCUUAUGCAAAUUAACUGCACGACUUCCGCUGAUGCAGUUGCACUGUCGUGUUGCAGCUUUUAGUCUGUCCUUUUGCGGUUGUUGCAUUUACAUCGGUCUCGUUCUUUUUGUUGUG .....(((((..((((((((........(((((...((((((((......).))))))).))))).........)))))))))))))............................. (-17.64 = -17.70 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:52 2011