| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,134,237 – 3,134,357 |
| Length | 120 |
| Max. P | 0.953866 |
| Location | 3,134,237 – 3,134,357 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 73.17 |
| Shannon entropy | 0.51289 |
| G+C content | 0.50650 |
| Mean single sequence MFE | -32.28 |
| Consensus MFE | -20.85 |
| Energy contribution | -20.72 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.953866 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3134237 120 + 24543557 CUUCCAGUGAGCGGAAGCUCGGCAGAGCAACAGAGA-AUCCCAGAGAGAAACACAUGUCCACCUGCUGUGAAGCUUAUUUACAAAAGAGUCACAAGCAGAGGCACACGAUAGAGAAAAGAU (((...(((.(((((.((((....))))........-.((.....))..........)))..(((((((((..(((........)))..)))).)))))..)).)))....)))....... ( -29.50, z-score = -1.66, R) >droSim1.chr3L 2661725 120 + 22553184 CUCCCAGUGAGCGGAAGCUCGGCAGAGCACCAGAGA-AUCCCAGAGAGAAACACAUGUCCACCUGCUGUGGAGCUUAUUUACAAAAGAGUCACAGGCAGAGGCACUCGAUAGAGAAAAUAU (((.(...((((....))))((.......)).....-......).))).......((((...(((((((((..(((........)))..))))).)))).))))(((....)))....... ( -30.90, z-score = -0.89, R) >droSec1.super_2 3128154 120 + 7591821 CUCCCAGUGAGCGGAAGCUCGGCAGAGCACCAGAGA-AUCCCAGAGAGAAACACAUGUCCACCUGCUGUGGAGCUUAUUUACAAAAGAGUCACAAGCAGAGGCACUCGAUAGAGAAAAGAU (((.(...((((....))))((.......)).....-......).))).......((((...(((((((((..(((........)))..)))).))))).))))(((....)))....... ( -30.90, z-score = -1.09, R) >droYak2.chr3L 15388732 117 - 24197627 UUUCCAGCGAGCGGAAGCUCGGCAGAGCGCCACA---AUCCCAGAGAGAAACACAUGUCCACCUGCUGUGGAGCUUAUUUAGAAAAGAGCCACAAGCAGAGCCACUCGAUACAGCAAAGA- ......((((((....))))(((.....)))...---........(((..((....))....(((((((((..(((........)))..)))).))))).....)))......)).....- ( -34.20, z-score = -2.34, R) >droEre2.scaffold_4784 3142866 117 + 25762168 UUUCCAGCGAGCGGAAGCUCGGCAGAGCGCCACA---AUCCCAGAGAGAAACACAUGUCCACCUGCUGUGGAGCUUAUUUAGAAAAGAGCCACAGGCAGCGGUACUCGAUACAGAAAAGA- ((((...(((((....)))))...(((..((...---......((.(........).))...(((((((((..(((........)))..))))).)))).))..)))......))))...- ( -36.10, z-score = -2.14, R) >droAna3.scaffold_13337 14311146 94 - 23293914 UCUCCGGCGAACGGAAGCUCGUGUGUGUAUCUGAGAGAUACUUUUCGCGCGUAAGAUUCUCUCGGCGGGAGAGUAGAGCCG----AGAAUUAGAAGCU----------------------- ..((((.....))))((((((((((.(((((.....)))))....))))))........(((((((...........))))----)))......))))----------------------- ( -32.10, z-score = -0.65, R) >consensus CUUCCAGCGAGCGGAAGCUCGGCAGAGCACCAGAGA_AUCCCAGAGAGAAACACAUGUCCACCUGCUGUGGAGCUUAUUUACAAAAGAGUCACAAGCAGAGGCACUCGAUAGAGAAAAGA_ .......(((((....))))).........................................(((((((((..(((........)))..))))).))))...................... (-20.85 = -20.72 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:50 2011