| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,122,693 – 3,122,783 |
| Length | 90 |
| Max. P | 0.959528 |
| Location | 3,122,693 – 3,122,783 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 71.54 |
| Shannon entropy | 0.53881 |
| G+C content | 0.43320 |
| Mean single sequence MFE | -24.82 |
| Consensus MFE | -11.57 |
| Energy contribution | -13.99 |
| Covariance contribution | 2.42 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3122693 90 - 24543557 CAGAGUUCAAUAAACUUGUCGAUUUCUUUGUCUGUCUAUGGC-UGUUGUGGUGCAAAGACAGUCGAUGAG----UGUAACUGCUGCUUGUUGCUC .............(((..(((((((((((((....(((..(.-..)..))).))))))).))))))..))----)(((((........))))).. ( -24.80, z-score = -1.55, R) >droEre2.scaffold_4784 3131480 89 - 25762168 CAGGGUUCAAUAAACUUUUCGAUUUCUUUGUCUAUGGCUA------UGUGGUGCAUAGACAGUCGAUGAGUGUAUGUAACUGCUGCUUGUUGCUC (((((((..(((.((((.(((((.....(((((((((((.------...))).))))))))))))).)))).)))..)))).))).......... ( -23.80, z-score = -1.58, R) >droYak2.chr3L 15377013 95 + 24197627 CAGAGUUCAAUAAACUUUUCGAUUUCUUUGUCUAUGGCUGUUGUGUUGUGGUGCAAAGACAGUCGAUGAGUGUAUGUAACUGCUGCUUGUUGCUC (((((((..(((.((((.((((((((((((((((..((......))..))).))))))).)))))).)))).)))..)))).))).......... ( -30.20, z-score = -3.41, R) >droSec1.super_2 3116467 90 - 7591821 CAGAGUUCAAUAAACUUGUCGAUUUCUUUGUCCGUCUAUGGC-UGUUGUGGUGCAAAGACAGUCGAUGAG----UGUAACUGCUGCUUGUUGCUC .............(((..((((((((((((((((.(......-....)))).))))))).))))))..))----)(((((........))))).. ( -25.30, z-score = -1.69, R) >droSim1.chr3L 2648317 90 - 22553184 CAGAGUUCAAUAAACUUGUCGAUUUCUUUGUCCGUCUAUGGC-UGUUGUGGUGCAAAGACAGUCGAUGAG----UGUAACUGCUGCUUGUUGCUC .............(((..((((((((((((((((.(......-....)))).))))))).))))))..))----)(((((........))))).. ( -25.30, z-score = -1.69, R) >droGri2.scaffold_15110 1507322 71 - 24565398 --CUGUCCAUUUAAGUUG--AGCUUCUUCGUUCAGCCUGCUGCUGUUGCAGCACUCA-ACAUACAGUU------UACAGUUC------------- --((((........((((--(((......))))))).((((((....))))))....-....))))..------........------------- ( -19.50, z-score = -2.31, R) >consensus CAGAGUUCAAUAAACUUGUCGAUUUCUUUGUCCAUCUAUGGC_UGUUGUGGUGCAAAGACAGUCGAUGAG____UGUAACUGCUGCUUGUUGCUC (((((((((.....((((((((((((((((((((..............))).))))))).))))))))))....)).)))).))).......... (-11.57 = -13.99 + 2.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:49 2011