| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,114,584 – 3,114,651 |
| Length | 67 |
| Max. P | 0.500000 |
| Location | 3,114,584 – 3,114,651 |
|---|---|
| Length | 67 |
| Sequences | 8 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 83.32 |
| Shannon entropy | 0.32358 |
| G+C content | 0.44403 |
| Mean single sequence MFE | -14.19 |
| Consensus MFE | -9.84 |
| Energy contribution | -9.94 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 3114584 67 - 24543557 ----CCAGUUGCCAGUCAAUCAUCGAGCUCCGUUGAUGGUUGUCUCUGUCGUUUGCAA--AAUUUUGUCAAUA ----.(((.((.(((.((((((((((......))))))))))...))).)).)))...--............. ( -14.60, z-score = -1.94, R) >droAna3.scaffold_13337 14292877 71 + 23293914 --CCCGAGUUGCCAGUCGACCAUCGAGCUACGUUGAUGGUUGCCUCAGUCGUUUGCAAACAUUUUUGUCAAUA --..(((.(((..((.((((((((((......)))))))))).)))))))).(((((((....)))).))).. ( -17.10, z-score = -1.30, R) >droEre2.scaffold_4784 3123341 67 - 25762168 ----CCAGUUGCCAGUCAAUCAUCGAGCUCCGUUGAUGGUUGUCUCUGUCGUUUGCAA--AAUUUUGUCAAUA ----.(((.((.(((.((((((((((......))))))))))...))).)).)))...--............. ( -14.60, z-score = -1.94, R) >droYak2.chr3L 15368715 67 + 24197627 ----CCAGUUGCCAGUCAAUCAUCGAGCUCCGUUGAUGGUUGUCUCUGUCGUUUGCAA--AAUUUUGUCAAUA ----.(((.((.(((.((((((((((......))))))))))...))).)).)))...--............. ( -14.60, z-score = -1.94, R) >droSec1.super_2 3108282 71 - 7591821 CAACCCAGUUGCCAGUCAAUCAUCGAGCUCCGUUGAUGGUUGUCUCUGUCGUUUGCAA--AAUUUUGUCAAUA .....(((.((.(((.((((((((((......))))))))))...))).)).)))...--............. ( -14.60, z-score = -1.52, R) >droSim1.chr3L 2640122 71 - 22553184 CAGCCCAGUUGCCAGUCAAUCAUCGAGCUCCGUUGAUGGUUGUCUCUGUCGUUUGCAA--AAUUUUGUCAAUA ..((.....((.(((.((((((((((......))))))))))...))).))...))..--............. ( -14.90, z-score = -1.37, R) >droPer1.super_29 207151 59 - 1099123 ------------CAGGCUAUCAUCGAACCUCGUUGGUGUUUGCCUUUGUCGUUUACAU--AACUUUGCCAAUA ------------..(((.......((((..((..(((....)))..))..))))....--......))).... ( -10.73, z-score = -0.85, R) >dp4.chrXR_group8 3975528 69 - 9212921 --CCCCAGUUGCCAGGCUAUCAUCGAACCUCGUUGGUGUUUGCCUUUGUCGUUUACAU--AACUUUGCCAAUA --.....((((.(((((...((((((......))))))...)))......(((.....--)))..)).)))). ( -12.40, z-score = -0.56, R) >consensus ____CCAGUUGCCAGUCAAUCAUCGAGCUCCGUUGAUGGUUGUCUCUGUCGUUUGCAA__AAUUUUGUCAAUA ............(((.((((((((((......))))))))))...)))......................... ( -9.84 = -9.94 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:48 2011