| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,101,270 – 3,101,364 |
| Length | 94 |
| Max. P | 0.534021 |
| Location | 3,101,270 – 3,101,364 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 69.72 |
| Shannon entropy | 0.58071 |
| G+C content | 0.57507 |
| Mean single sequence MFE | -30.82 |
| Consensus MFE | -17.51 |
| Energy contribution | -18.30 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.39 |
| Mean z-score | -0.61 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.534021 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3101270 94 + 24543557 CCAAUUACCAAUUACGGUUAAGGGGAGGGCGGGCAGCCAUUUCUGGGUGCGGUGCUCAGCCAAUCUUCUGGUCUGCCGGUUCUCCUGGUCGGGC ((....(((......)))....((((((((.((((((((.....((((..(((.....))).))))..))).))))).))))))))....)).. ( -35.90, z-score = -0.92, R) >droSim1.chr3L 2626226 94 + 22553184 CCAAUUACCAAUUGCGGGUAAAGGGUGGGCGGGCAACCAUUUCUGGGUGCGGUGCUCAGCCAAUCUUCUGGUCUGCCGGUUCUCCUGGUCGGGC ((..(((((.......))))).(((.((((.((((((((.....((((..(((.....))).))))..)))).)))).)))).)))....)).. ( -31.60, z-score = 0.35, R) >droSec1.super_2 3094830 94 + 7591821 CCAAUUACCAAUUGCGGGUAAAGGGUGGGCGGGCAGUCAUUUCUGGGUGCGGUGCUCAGCCAAUCUUCUGGUCUGCCGGUUCUCCUGGUCGGGC ((..(((((.......))))).(((.((((.(((((......((((((.....))))))(((......))).))))).)))).)))....)).. ( -32.10, z-score = -0.06, R) >droYak2.chr3L 15353094 94 - 24197627 UCAAUUACACAUAAGACGUGUGGGAAGGGCGGGCAGCCACUUCUGGGUGCGGUGCUUAGCCAAUCUUCUGGUCUGCCGGUUCUCCUGGUCGGGC .......(((((.....)))))(((((((((((((.(((((....)))).).))))).)))...))))).(((((((((.....)))).))))) ( -32.80, z-score = -0.30, R) >droEre2.scaffold_4784 3109563 94 + 25762168 CUAAUUACCAAUAACAGGUAAGGGGCGGGCGGGCAGCCACUUAUGGGUGCGGUGCUUAGCCAAUCUUCUGGUCUGCCGGUUCUCCUGGUCGGGC .......((.....((((...(((((.((((((((.(((((....)))).).)))...((((......))))))))).)))))))))....)). ( -33.80, z-score = -0.45, R) >droWil1.scaffold_181017 178558 71 + 939937 --------CCAGAACCCACUUGGGACUGGCCA-UAAGCAUAAACGACUUCAAUUAUCGCUUAGCCUCACGGAUAUCUGGC-------------- --------(((((.(((....)))...(((..-(((((((((..(....)..)))).)))))))).........))))).-------------- ( -18.70, z-score = -2.29, R) >consensus CCAAUUACCAAUAACGGGUAAGGGGAGGGCGGGCAGCCAUUUCUGGGUGCGGUGCUCAGCCAAUCUUCUGGUCUGCCGGUUCUCCUGGUCGGGC .....................((((.((((.((((((((.....((((..(((.....))).))))..))).))))).))))))))........ (-17.51 = -18.30 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:47 2011