| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,243,945 – 4,244,085 |
| Length | 140 |
| Max. P | 0.956847 |
| Location | 4,243,945 – 4,244,085 |
|---|---|
| Length | 140 |
| Sequences | 4 |
| Columns | 156 |
| Reading direction | reverse |
| Mean pairwise identity | 79.63 |
| Shannon entropy | 0.32958 |
| G+C content | 0.40885 |
| Mean single sequence MFE | -35.70 |
| Consensus MFE | -25.95 |
| Energy contribution | -26.57 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956847 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4243945 140 - 23011544 ----------------GCCUGGGGGUCAGGUGACUACUAUUUCUUUCUGUGUACGUUUUUAUGCAUCGAAGAAGAAGUUUCCUUGCAAAUGUAUUUCCCCCCAUGAUGUUGCAUUAAUGGUUACUACCAUGUAUGCAACGUGCAGUGCCACAUCGU ----------------....(((((..(((.((((.((...(((((.((((((......))))))..))))))).)))).)))(((....)))....)))))(((((((.(((((.(((((....)))))(((((...)))))))))).))))))) ( -42.30, z-score = -2.28, R) >droSim1.chr2L 4162291 156 - 22036055 GCCUUCAAAUAUAUUACUAAGCAUACCAAGUCAAUACGAUUUCUUACUGUGUACAUUUUUAUGCAUCGAAGAAAAAGUUUCCUUGCAAAUGUAUUUCCCCCCGUGAUGUUGCAUUAAUGGUUACUACCAUGUAUGCAACGUGCAGUGCCACAUCGC ......(((((((((.....(((((..(((((.....))))).....))))).........((((..((((......))))..)))))))))))))......(((((((.(((((.(((((....)))))(((((...)))))))))).))))))) ( -34.90, z-score = -2.13, R) >droSec1.super_5 2341113 155 - 5866729 -CCUUCAAAUAUAUUACUAAGCAUACCAUGUGAAUACUAUUUCUUGCUGUGUAAAUUUUAAUGCAUCGAAGAAGAAGUUUCCUUGCAAAUGUAUUUCCCCCCGUGAUGUUGCAUUAAUGGUUACUACCAUGUAUGCAACGUGCAGUGCCACAUCGC -.....(((((((((.....(((((.((...(((......))).)).))))).........((((..((((......))))..)))))))))))))......(((((((.(((((.(((((....)))))(((((...)))))))))).))))))) ( -36.80, z-score = -2.49, R) >droEre2.scaffold_4929 4320226 122 - 26641161 ----------------------------------UACUAUUUCUCGCUGUGUACGUUUUUAUGCAUCGACGAAGAAGUUUCCUUGCAAAUGUAUUUCCCCCCGUGAUGUUGCAUUAAUGGUUACAACCAUGUAUGCAACGCUCUGUGCCACAUCGC ----------------------------------.(((.(((((((.((((((......)))))).))).)))).)))........................((((((((((((..(((((....)))))..)))))))((.....))...))))) ( -28.80, z-score = -1.65, R) >consensus ________________CUAAGCAUACCA_GUGAAUACUAUUUCUUGCUGUGUACAUUUUUAUGCAUCGAAGAAGAAGUUUCCUUGCAAAUGUAUUUCCCCCCGUGAUGUUGCAUUAAUGGUUACUACCAUGUAUGCAACGUGCAGUGCCACAUCGC ..................................................(((((((....((((..((((......))))..)))))))))))........(((((((.(((((.(((((....)))))(((((...)))))))))).))))))) (-25.95 = -26.57 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:47 2011