| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,083,426 – 3,083,521 |
| Length | 95 |
| Max. P | 0.942838 |
| Location | 3,083,426 – 3,083,521 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.36 |
| Shannon entropy | 0.48065 |
| G+C content | 0.41498 |
| Mean single sequence MFE | -22.04 |
| Consensus MFE | -8.87 |
| Energy contribution | -8.77 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.942838 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3083426 95 - 24543557 UCCAACCCCACACCAAAGUUCUUGUUAUUUUCCACAGUUAUCGAUACGACGAUAA-------CGCGCGUAGG---UCCAA--CAUUUUUGGAGUAUGCGCAAUAUAU ....................................(((((((......))))))-------)(((((((..---(((((--.....))))).)))))))....... ( -22.80, z-score = -2.99, R) >droSim1.chr3L 2606318 96 - 22553184 UCCAACCCCAAAAAAAAAUUCUUGUUAUUUUCCACAGUUAUCGAUACGACGAUAA-------CGCGCGUAGG--CCCCAA--CAUUUUUGGAGUAUGCGCAAUAUAU ....................................(((((((......))))))-------)((((((..(--(.((((--.....)))).))))))))....... ( -21.20, z-score = -2.61, R) >droSec1.super_2 3076963 96 - 7591821 UCCAACCCCACACCGAAAUUCUUGUUAUUUUCCACAGUUAUCGAUACGACGAUAA-------CGCGCGUAGG--CCCCAA--CAUUUUUGGAGUAUGCGCAAUAUAU ....................................(((((((......))))))-------)((((((..(--(.((((--.....)))).))))))))....... ( -21.20, z-score = -2.38, R) >droYak2.chr3L 15333547 94 + 24197627 --UCGAAGCAAACCAAAAUUCUUGUUAUUUUCCACAGUUAUCGAUACGACGAUAA-------CGCGCGUAGG--CCCCAA--CAUUUUUGGAGUAUGCGCAAUAUAU --.....((.............(((........)))(((((((......))))))-------)))(((((.(--(.((((--.....)))).)).)))))....... ( -22.60, z-score = -2.30, R) >droEre2.scaffold_4784 3091627 92 - 25762168 --ACCAACCAAACCGAAAUUCUUGUUAUUUUCCACAGUUAUCGAUACGACGAUAA---------CGCGUAGG--CUCCAA--CAUUUUUGGAGUAUGCGCAAUAUAA --..................................(((((((......))))))---------)(((((.(--((((((--.....))))))).)))))....... ( -25.40, z-score = -4.20, R) >droAna3.scaffold_13337 14259346 94 + 23293914 -----------ACUAUAUUUCUUGUUAUUUUCCACAGUUAUCGAUAUGGCGAUAACGGGGCGCGCGAGUAGGGCCCCCAACUCAUUUUUAGAGUGUGCGCAAUGU-- -----------....................((...(((((((......))))))).))((((((((((.((....)).))))((((...)))))))))).....-- ( -28.10, z-score = -1.66, R) >droWil1.scaffold_181017 153344 78 - 939937 ------------UCCUGGCCGUUGUUAUUUUCCACAGUUAUCGAUAAAACGAUAA-------CGCUAUUUU---CCCCC---CUUCUUUGGCACACAAUAAAU---- ------------........(((((...........(((((((......))))))-------)((((....---.....---......))))..)))))....---- ( -12.96, z-score = -1.94, R) >consensus __CAACCCCAAACCAAAAUUCUUGUUAUUUUCCACAGUUAUCGAUACGACGAUAA_______CGCGCGUAGG__CCCCAA__CAUUUUUGGAGUAUGCGCAAUAUAU .....................................((((((......))))))..........(((((......((((.......))))....)))))....... ( -8.87 = -8.77 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:38 2011