| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,081,114 – 3,081,267 |
| Length | 153 |
| Max. P | 0.798702 |
| Location | 3,081,114 – 3,081,267 |
|---|---|
| Length | 153 |
| Sequences | 6 |
| Columns | 160 |
| Reading direction | forward |
| Mean pairwise identity | 90.73 |
| Shannon entropy | 0.17636 |
| G+C content | 0.53984 |
| Mean single sequence MFE | -46.76 |
| Consensus MFE | -39.59 |
| Energy contribution | -40.32 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.798702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3081114 153 + 24543557 UGACUGUAUCUGCAGCAAUAUGCAAGC------AACAGCACCAUCUGCGGC-UAUGACCACAUAUUUACAGUUAAUCGGAUGGACGGGCGAGCGAGCGGUCCCCACACCACACGCCCACUUUGUCUUCGCCGCUCGUCUGUCAUCGUCACACAGUUUGAC ((((((((..((((......))))(((------..(((......)))..))-).............))))))))....((((.(((((((((((.(((((......)))(((.........)))....)))))))))))))))))((((.......)))) ( -48.00, z-score = -1.58, R) >droSim1.chr3L 2603945 153 + 22553184 UGACUGUAUCUGCAGCAAUAUGCAAGC------AACAGCACCAUCUGCGGC-UAUGACCACAUAUUUACAGUUAAUCGGACGGACGGGCGAGCGAGCGGACCCCACACCACACGCCCACUUUGUCUUCGCCGCUCGUCUGUCAUCGUCACACAGUUUGAC ((((((((..((((......))))(((------..(((......)))..))-).............))))))))....((((((((((((((((.(((((..(...................)..)))))))))))))))))..))))............ ( -49.71, z-score = -2.31, R) >droSec1.super_2 3074576 153 + 7591821 UGACUGUAUCUGCAGCAAUGUGCAAGC------AACAGCACCAUCUGCGGC-UAUGACCACAUAUUUACAGUUAAUCGGUCGGACGGGCGAGCGAGCGGACCCCACACCACACGCCCACUUUGUCUUCGCCGCUCGUCUGUCAUCGUCACACAGUUUGAC .((((((....((((....((((....------....))))...))))(((-..(((((..................)))))((((((((((((.(((((..(...................)..)))))))))))))))))...)))..)))))).... ( -50.58, z-score = -1.83, R) >droYak2.chr3L 15331155 155 - 24197627 UGACUGUAUCUGCAGCAAUAUGCAAGC---AACAACAGCACCAUCUGCAGC-UAUGACCACAUAUUUACAGUUAAUCGGACGGACGGGCGAGCGAGCGG-CCCCACACCACACGCCCACUUUGUCUUCGCCGCUCGUCUGUCAUCGUCACACAGUUUGAC ((((((((.((((((.....(((....---.......)))....)))))).-((((....))))..))))))))....((((((((((((.(((((.((-(.....................))))))))))))))))))))...((((.......)))) ( -49.10, z-score = -2.45, R) >droEre2.scaffold_4784 3089285 159 + 25762168 UGACUGUAUCUGCAGCAAUAUGCAAGCCACAACAACAGCACCAUCUGCUGC-UAUGACCACAUAUUUACAGUUAAUCGGUCGGACGGGCGAGCGAGCGGACCCCACACCACACGCCCACUUUGUCUUCGCCGCUCGUCUGUCACCGUCACACAGUUUGAC ((((((((...((((((...(((..............))).....))))))-((((....))))..))))))))...(((..((((((((((((.(((((..(...................)..))))))))))))))))))))((((.......)))) ( -49.55, z-score = -2.36, R) >droAna3.scaffold_13337 14256939 142 - 23293914 CCACUGUACCUGCAGCAAUAU--------------CAACAACAAUUGCAGCCUAUGGCCACAUAUUUACAGUUAAUCGG----GCGGGCGAGCGAGCAAGCCCCACUCCACACGCCCACUUUGUCUUCUCCGCUCGUCUGUCAUCGUCACACAGUUUGGC ((((((((...((.(((((..--------------........))))).)).((((....))))..))))))......(----(((((((((((((.(((.(....................).))))).))))))))))))...............)). ( -33.65, z-score = 0.11, R) >consensus UGACUGUAUCUGCAGCAAUAUGCAAGC______AACAGCACCAUCUGCGGC_UAUGACCACAUAUUUACAGUUAAUCGGACGGACGGGCGAGCGAGCGGACCCCACACCACACGCCCACUUUGUCUUCGCCGCUCGUCUGUCAUCGUCACACAGUUUGAC ((((((((.((((((.....(((..............)))....))))))..((((....))))..))))))))...((...((((((((((((.(((((.........................))))))))))))))))).))((((.......)))) (-39.59 = -40.32 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:35 2011