| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,076,842 – 3,076,936 |
| Length | 94 |
| Max. P | 0.902789 |
| Location | 3,076,842 – 3,076,936 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 69.26 |
| Shannon entropy | 0.56597 |
| G+C content | 0.49081 |
| Mean single sequence MFE | -26.75 |
| Consensus MFE | -14.13 |
| Energy contribution | -14.88 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.902789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3076842 94 - 24543557 ----GAAGGCACGAAAAGACAAAAGGG--AGGGAAAGGCGUCGUAAGACGUGGGAAAGACCAUGCUGGUGUCAUUAUUAGCCGCUUUUGCCAAAAUGAGA----- ----.......................--.((.(((((((((....)))((((......))))(((((((....))))))).)))))).)).........----- ( -26.30, z-score = -1.96, R) >droSim1.chr3L 2599223 94 - 22553184 ----GAAGGCACGAAAAGACAAAAGGG--GGGAAAAGGCGUCGAAAGACGUGGGAAAGACCAUGCUGGUGUCAUUAUUAGCCGCUUUUGCCAAAAUGAAG----- ----...(((.(.....).........--....(((((((((....)))((((......))))(((((((....))))))).))))))))).........----- ( -25.50, z-score = -1.93, R) >droSec1.super_2 3070249 94 - 7591821 ----GAAGGCACGAAAAGACAAAAGGG--GGGAAAUGGCGUCGAAAGACGUGGGAAAGACCAUGCUGGUGUCAUUAUUAGCCGCUUUUGCCAAAAUGAAA----- ----...(((.(.....)..(((((.(--(.(((((((((((....)))((((......))))......)))))).))..)).)))))))).........----- ( -26.70, z-score = -2.16, R) >droYak2.chr3L 15326883 95 + 24197627 ---GGAAGGCGCGAACAGACAAAAAGG--GGGAAAAGGCGUAGAAAGACGUGGGAAACACCAUGCUGGUGUCAUUAUUAGCCGUUUGUGCCAAAAUGAAA----- ---....(((((((((.........((--........((((......)))).(....).))..(((((((....))))))).))))))))).........----- ( -28.20, z-score = -2.74, R) >droEre2.scaffold_4784 3084768 97 - 25762168 ---AGCAGACACGAACAGACAAAGGGGGAGGGAAAAGGCGCAGAAAUAAGUGGGAUACACCAUGCUGGUGUCAUUAUUAGCCGCUUGUGCCAAAAUGAAA----- ---.................................(((((((......((((......))))(((((((....)))))))...))))))).........----- ( -21.00, z-score = -0.04, R) >droMoj3.scaffold_6680 23746847 105 + 24764193 CGAAAUGGGGUUAGGGUAUCACGCCGAGCAGUGGGAGGGAGAGAGAAAGGGUUGCUAUGGUGUCACUCUCUCGAUAGCAGCUGCCACUGCCACAGCCACUGCGAA .....(((.((.(.....).)).))).((((((((((((((.((.(..(........)..).)).)))))))....((((......)))).....)))))))... ( -32.80, z-score = 0.56, R) >consensus ____GAAGGCACGAAAAGACAAAAGGG__GGGAAAAGGCGUAGAAAGACGUGGGAAAGACCAUGCUGGUGUCAUUAUUAGCCGCUUUUGCCAAAAUGAAA_____ ..............................((.(((((((.........((((......))))(((((((....)))))))))))))).)).............. (-14.13 = -14.88 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:34 2011