| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,075,359 – 3,075,468 |
| Length | 109 |
| Max. P | 0.699311 |
| Location | 3,075,359 – 3,075,468 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 73.17 |
| Shannon entropy | 0.43768 |
| G+C content | 0.32834 |
| Mean single sequence MFE | -19.72 |
| Consensus MFE | -11.85 |
| Energy contribution | -12.10 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.699311 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3075359 109 + 24543557 --------AUUU-UAAAUGUGGCAUAAAAAUUAAAGCAAAGUGAACUUCCAAAGAUGUCCACAUUUUGCAUUUAAGCCCCCAAAAAU-CAUAUUUUAUACGUAAUACCGGACAGUUAUG --------....-.((((((((........(((((((((((((.((.((....)).))...)))))))).)))))...........)-)))))))....((((((........)))))) ( -14.71, z-score = -0.19, R) >droEre2.scaffold_4784 3082893 119 + 25762168 CAUUUUAAAUGCGGAAAUGUGACGUAAAAAUUAAAUUAUUGUGCAGUCUCGAAGAUGUCCUCAUUUCGCAAUUAAGCCCCCAAAAUCAUUUGUUUUGCACGUAAUACCUGACAGUUACG ...(((((.((((.(((((.((((((..(((......))).))).(((.....))))))..))))))))).)))))....((((((.....))))))..((((((........)))))) ( -19.20, z-score = -0.12, R) >droYak2.chr3L 15325402 119 - 24197627 CAUUUUAAAUGCGGAAGUGUGACGUAAAAACAAAAUUAUUGUGCAUUCUCGAAGAUGUCCUCAUUUCGCGUUUAAGCACCCAAAAUCAUUUUUUUUGCACAUAAUACCUGGCAGUUAUG ....(((((((((.(((((.(((((....((((.....))))............)))))..))))))))))))))(((...((((....))))..))).((((((........)))))) ( -21.69, z-score = -0.31, R) >droSim1.chr3L 2597896 101 + 22553184 -AUUUUAAAUGUGUAAAUGUGACGUUAAAAUUAAAGUA----------------AUGUCCUCAUUUUGCAUUUAAGCCCCCAAAAAU-CAUAUUUUGUACGUAAUACCGUACAGUUAUG -..((((((((((.(((((.(((((((.........))----------------)))))..)))))))))))))))...........-((((..(((((((......))))))).)))) ( -23.30, z-score = -4.96, R) >consensus _AUUUUAAAUGCGGAAAUGUGACGUAAAAAUUAAAGUAUUGUGCA_UCUCGAAGAUGUCCUCAUUUCGCAUUUAAGCCCCCAAAAAC_CAUAUUUUGCACGUAAUACCGGACAGUUAUG ....(((((((((.(((((.(((((.............................)))))..))))))))))))))........................((((((........)))))) (-11.85 = -12.10 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:33 2011