| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,070,301 – 3,070,397 |
| Length | 96 |
| Max. P | 0.967518 |
| Location | 3,070,301 – 3,070,397 |
|---|---|
| Length | 96 |
| Sequences | 11 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 65.71 |
| Shannon entropy | 0.67168 |
| G+C content | 0.62015 |
| Mean single sequence MFE | -27.09 |
| Consensus MFE | -14.64 |
| Energy contribution | -14.17 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.69 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967518 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3070301 96 + 24543557 CACCGCCCCCUCCGUCCAACAACUGUUUCUUGGCCGGCGGUUCUCCGCUGCCCUGCGUGUCCAGCGGCACGCCCAC------CACAUUGCCGCCGCCCACCG .((((((....(((...(((....)))...)))..)))))).....((......))(((..(.((((((.......------.....)))))).)..))).. ( -27.90, z-score = -0.83, R) >droPer1.super_29 164021 79 + 1099123 -----------GCAUCGAGACAUGGUUUCUUGGACGGCGGCUCACCGCUGAUCUGAGUGUCGAGUGGCACUCCCAC------UACGUUGUUGCCAC------ -----------(((.(((((((......((..((((((((....)))))).))..)))))).(((((.....))))------)...))).)))...------ ( -27.50, z-score = -0.90, R) >dp4.chrXR_group8 3933002 79 + 9212921 -----------GCAUCGAGACAUGGUUUCUUGGACGGCGGCUCACCGCUGAUCUGAGUGUCGAGUGGCACUCCCAC------UACGUUGUUGCCAC------ -----------(((.(((((((......((..((((((((....)))))).))..)))))).(((((.....))))------)...))).)))...------ ( -27.50, z-score = -0.90, R) >droAna3.scaffold_13337 14244955 85 - 23293914 -----GCGUUCGGAUCAAGCAACUGUUUCUUUGCCGGCGGCUCGCCACUAUUCUGAGUGUCCAGCGGCACACCCAC------AACGCCCCCUCCCG------ -----((((((((...((((....)))).....)))((.(((.(.((((......)))).).))).))........------))))).........------ ( -21.50, z-score = -0.06, R) >droEre2.scaffold_4784 3077792 91 + 25762168 -----CCCCCUCCGUCCAACAACUGUUUCUUGGCCGGCGGCUCUCCGCUGCUCUGCGUGUCCAGCGGCACGCCCAC------CACAUUGCCGGCGCCCACCG -----...........................(((((((((...((((((..(.....)..))))))...)))...------......))))))........ ( -26.90, z-score = -0.15, R) >droYak2.chr3L 15320076 88 - 24197627 --------CCCCCGUCCAACAACUGUUUCUUGGCCGGCGGCUCUCCGCUGCUCUGCGUGUCAAGCGGCACGCCCAC------CACAUUGCCGCCGCCUCCCG --------.......................(((.((((((.......((....(((((((....))))))).)).------......)))))))))..... ( -28.24, z-score = -1.50, R) >droSec1.super_2 3063794 96 + 7591821 CACCGCCCCCUCCCUCCAACAACUGUUUCUUGGCCGGCGGUUCUCCGCUUCCCUGCGUGUCCAGCGGCACGCCCAC------CACAUUGCCGCCGCCCACCG ..............................(((.(((((((.............(((((((....)))))))....------......))))))).)))... ( -27.00, z-score = -1.96, R) >droWil1.scaffold_181017 136046 88 + 939937 -----CUAUUUGGAUCUAGCAAUUGUCUUUUUGCAGGCGGUUCGCCACUGUUUUGAGUAUCUAGCGGCACGCCCAC------CACACCACCACCAACCG--- -----....((((.....((((........)))).((((....(((.(((..(.....)..))).))).))))...------..........))))...--- ( -19.20, z-score = -0.42, R) >droMoj3.scaffold_6680 21679441 94 + 24764193 -----GCGUUCGGAUCGAGCAUCUGCUUCUUAGCAGGUGGCUCGCCGCUGCCUUGCGUAUCUAACGGUACGCCCA---CCGACAUGUUACCGCUUCCUCCCG -----((((((((..((((((((((((....))))))).)))))..........(((((((....)))))))...---)))).))))............... ( -34.80, z-score = -2.89, R) >droVir3.scaffold_13049 10037348 94 - 25233164 -----GCACUCGGAUCAAGCAUUUGCUUCUUAGCUGGAGGCUCACCGCUACUCUGCGUAUCUAACGGUACGCCCA---ACGACAUGCUACUACUACCUCCCG -----(((.(((.....(((....((((((.....)))))).....))).....(((((((....)))))))...---.)))..)))............... ( -25.40, z-score = -2.39, R) >droGri2.scaffold_15110 4966357 93 - 24565398 -----GCAUUUGUAUCGAGCAUUUGCUUUUUCGCAGGCGGUUCACCGCUGCUCUGCGUAUCCAGUGGCACGCCCACUGAUGACAUGCUGCUGCUGCCU---- -----(((..(((.....)))..)))......((((((((....)))).((...((((.((((((((.....))))))..)).)))).))..))))..---- ( -32.10, z-score = -0.95, R) >consensus _____CC_CUUGCAUCCAGCAACUGUUUCUUGGCCGGCGGCUCACCGCUGCUCUGCGUGUCCAGCGGCACGCCCAC______CACGUUGCCGCCGCCC_CCG ...................................((((((.............(((((((....))))))).............))))))........... (-14.64 = -14.17 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:32 2011