| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,035,330 – 3,035,423 |
| Length | 93 |
| Max. P | 0.515693 |
| Location | 3,035,330 – 3,035,423 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 73.73 |
| Shannon entropy | 0.49242 |
| G+C content | 0.39310 |
| Mean single sequence MFE | -18.34 |
| Consensus MFE | -10.07 |
| Energy contribution | -11.05 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3035330 93 + 24543557 UCGAGCUCUUUGUCAAGAAGCGCUUGAAUCGUGGGUAAGAAUAAAGUCGCACCUA-CAAAAUGAACGAAUUAGAACUUUUUGCCACGAGAAUAG ((((((.((((.....)))).)))))).((((((.((((((.....(((......-.........)))........))))))))))))...... ( -21.18, z-score = -1.09, R) >droSim1.chr3L 2568526 94 + 22553184 UCGAGCUCUUUGUCAAAAAGCGCUUGAAUCGUGGGUAAGAAUAAAGUCGCACCUAAUGAAAUGAACGAAUUAGAACUUUUUGCCACGAGAAUAG ((((((.((((.....)))).)))))).((((((.((((((....(.....)(((((...........)))))...))))))))))))...... ( -21.50, z-score = -1.34, R) >droSec1.super_2 3039465 94 + 7591821 UCGAGCUCUUUGUCAAGAAGCGCUUGAAUCGUGGGUAAGAAUAAAGUCGCACCUAAUAGAAAGAACGAAUUAGAACUUUUUGCCACGAGAAUAG ((((((.((((.....)))).)))))).((((((((..((......))..)))...(((((((..(......)..))))))).)))))...... ( -22.50, z-score = -1.37, R) >droYak2.chr3L 15295309 94 - 24197627 UCGAGCUCUUUGUAAAAAAGCGCUUGAAUAGUGGGUAAGAAUACAAUUGCACCAAAAAGAAUGAACGAAUUAGAACUUUUUGCCACGAGAAUAU ((((((.((((.....)))).))))))...((((((((........))))..(((((((..(((.....)))...)))))))))))........ ( -22.20, z-score = -2.98, R) >droEre2.scaffold_4784 3053146 93 + 25762168 UCGAGCUCUUUGUGAAAAAGCGCUUGAAUAGUGGGUAAGAAUAAACUAGCACCAA-AAAAAUGAACGAAUUAGAACUUUUUGCCACGAGAAUAG ((((((.((((.....)))).))))))...((((((.((......)).))..(((-(((..(((.....)))....))))))))))........ ( -17.40, z-score = -1.16, R) >dp4.chrXR_group6 9814763 70 + 13314419 UAGAAUUAUUUGUGCAGAAACGGCUGAGCAGUGGGUAAGAA-----------------------ACCAAUCUAGAAUCUUUGCCACGAGAAUG- ........((((((((((.....((((....(((.......-----------------------.))).)).))....)))).))))))....- ( -11.80, z-score = 0.10, R) >droPer1.super_61 90581 70 + 350175 UAGAAUUAUUUGUGCAGAAACGGCUGAGCAGUGGGUAAGAA-----------------------ACCAAUCUAGAAUCUUUGCCACGAGAAUG- ........((((((((((.....((((....(((.......-----------------------.))).)).))....)))).))))))....- ( -11.80, z-score = 0.10, R) >consensus UCGAGCUCUUUGUCAAGAAGCGCUUGAAUAGUGGGUAAGAAUAAAGUCGCACCUA__AAAAUGAACGAAUUAGAACUUUUUGCCACGAGAAUAG ((((((.((((.....)))).))))))...((((.((((((...................................))))))))))........ (-10.07 = -11.05 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:30 2011