| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,006,639 – 3,006,729 |
| Length | 90 |
| Max. P | 0.899081 |
| Location | 3,006,639 – 3,006,729 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 66.67 |
| Shannon entropy | 0.65361 |
| G+C content | 0.42278 |
| Mean single sequence MFE | -25.96 |
| Consensus MFE | -8.98 |
| Energy contribution | -10.59 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.899081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3006639 90 - 24543557 CAAAGAGUACGGCAAUUGGUGUUGCUGAUUAUAUGAGACAUGUAAUUGUGGCCCUGGGUGUU------UUUGUGAUGUUUGUGGUCGUGCUCAGUU-- ....(((((((((....((.((..(.(((((((((...))))))))))..))))(..(..((------.....))..)..)..)))))))))....-- ( -28.50, z-score = -2.95, R) >droSim1.chr3L 2539574 90 - 22553184 CAAAGAGUACGGCAAUUGCUGUUGCUGAUUAUAUGAUACAUGUAAUUGUGGCCCUGGGUGUU------UUUGUGAUGUUUGUGGUCGUGCUCAGUU-- ....((((((((((((....))))))(((((((((...)))))))))..((((.(..(..((------.....))..)..).))))))))))....-- ( -27.70, z-score = -2.50, R) >droSec1.super_2 3010844 84 - 7591821 CAAAGAGUACGGCAAUUGCUGUUGCUGAUUAUAUGACACAUUUAAUUGUGGCCCUGGGUGUU------UUUGUGAUGU------UUGUGCUCAGUU-- ....((((((((((((....)))))).((((((...((((......))))(((...)))...------..))))))..------..))))))....-- ( -21.50, z-score = -0.90, R) >droYak2.chr3L 15264592 96 + 24197627 CAAAGAGUACGGCAAUUGCUGUUACUGAUUAUAUGAUACAUGUAAUUGUGGCCCUGGGUGUUUGGGUGUUUGUGAUGUCUGUUGUCGUGCUCAGUU-- ....((((((((((((.(.((((((.(((((((((...)))))))))...((((.........))))....)))))).).))))))))))))....-- ( -33.10, z-score = -3.70, R) >droEre2.scaffold_4784 3024261 88 - 25762168 CAAAGAGUACGGCAAUUGCUGUUGCUGAUUAUAUGAUACAUGUAAUUGUGGCACUGGGUG--------UUUGUGAUGUUUGUGGUCGUGCUCAGUU-- ....(((((((((......(((..(.(((((((((...))))))))))..))).(..(..--------((...))..)..)..)))))))))....-- ( -25.30, z-score = -1.48, R) >droAna3.scaffold_13337 14190695 89 + 23293914 AAAAAAGUGUCACAAAUGCUGUUGU--GUUG-AUGAUACAUGGGUCUGUAACUGUGGCUGU------GGUUGCGGUUUCGUUUAGCUCAUACAACCUU ......((((((..(((((....))--))).-.))))))(((((.(((.(((((..((...------.))..))))).....))))))))........ ( -25.60, z-score = -1.97, R) >droGri2.scaffold_15110 19563339 78 - 24565398 AUGAAAAUAC-ACAAACAGCUUUGCGCACAUUGUGUCAU-UGUGGUUGUUGUUC-GAUUGU------GGUUGUGGCCGCAGUAAAGC----------- ..........-...(((((((.(((((.....))).)).-...)))))))(((.-.(((((------(((....))))))))..)))----------- ( -20.00, z-score = 0.23, R) >consensus CAAAGAGUACGGCAAUUGCUGUUGCUGAUUAUAUGAUACAUGUAAUUGUGGCCCUGGGUGUU______UUUGUGAUGUCUGUGGUCGUGCUCAGUU__ ....((((((((((((....))))).(((((((((...)))))))))......................................)))))))...... ( -8.98 = -10.59 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:27 2011