| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,005,507 – 3,005,635 |
| Length | 128 |
| Max. P | 0.996984 |
| Location | 3,005,507 – 3,005,612 |
|---|---|
| Length | 105 |
| Sequences | 7 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 67.62 |
| Shannon entropy | 0.62033 |
| G+C content | 0.42963 |
| Mean single sequence MFE | -28.26 |
| Consensus MFE | -15.29 |
| Energy contribution | -17.20 |
| Covariance contribution | 1.91 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.02 |
| SVM RNA-class probability | 0.996984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3005507 105 + 24543557 -----------GUUUAAAGUUUUUUCGGAUGGCUGGCAUGUAG-AUUUCAGUCAGCUUUCAGUGGUUAAGCCGCGUAAUCCGAGCUGUAUUUAUGGUUCUUUCAGCCAUUCAGAAAG -----------...........((((((((((((((.....((-(..(((..((((((...((((.....)))).......))))))......))).))).)))))))))).)))). ( -29.90, z-score = -2.72, R) >droSim1.chr3L 2538452 105 + 22553184 -----------GUUUAAAGUUUUUUCGGAUGGCUGGCAUGUAG-AUUUCAGUCAGCUUUCAGUGGUUAAGCCGCGUAAUCCGAGCUGUAUUUAUGGUUCUUUCAGCCAUUCAGAAAG -----------...........((((((((((((((.....((-(..(((..((((((...((((.....)))).......))))))......))).))).)))))))))).)))). ( -29.90, z-score = -2.72, R) >droSec1.super_2 3009725 105 + 7591821 -----------GUUUAAAGUUUUUUCGGAUGGCUGGCAUGUAG-AUUUCAGUCAGCUUUCAGUGGUUAAGCCGCGUAAUCCGAGCUGUAUUUAUGGUUCUUUCAGCCAUUCAGAAAG -----------...........((((((((((((((.....((-(..(((..((((((...((((.....)))).......))))))......))).))).)))))))))).)))). ( -29.90, z-score = -2.72, R) >droYak2.chr3L 15263431 105 - 24197627 -----------GUUUAAAGUUUUUUCGGAUGGCUGGCAUGUAG-AUUUCAGUCAGCUUUCAGUGGUUAAGCCGCGUAAUCCGAGCUGUGUUUAUGGUUGUUUCAGCCAUUCAGAAGG -----------............((((((((((((((.((...-....)))))))))....((((.....))))...)))))))(((.....(((((((...))))))).))).... ( -31.70, z-score = -2.82, R) >droEre2.scaffold_4784 3023119 105 + 25762168 -----------GUUUAAAGUUUUGUCGGAUGGCUGGCAUGUAG-AUUUCAGUCAGCUUUCAGUGGCUAAGCCGCGUAAUCCGAGCUGUAUUUAUGGUUCUUUCAGCCAUUCAGCAUG -----------.............(((((((((((((.((...-....)))))))))....(((((...)))))...))))))((((.....((((((.....)))))).))))... ( -34.60, z-score = -3.21, R) >droAna3.scaffold_13337 14189448 100 - 23293914 GCUUAAAAUUGUUUUCCCCUUUUUUUGCGGCUUUGUUCUGUGG-AUCUGAAAAGGCUUUUGGCAGUUGAGCUGUGUAAUCCAAGCGGUAUUUAUGAACCAC---------------- ((((((((..(.......)..)))).(((((((....((((.(-((((....)))...)).))))..))))))).......))))(((........)))..---------------- ( -19.90, z-score = 0.62, R) >dp4.chrXR_group8 3814892 99 + 9212921 -----------GUGUAUAUUGUUGUGGGAUACCCGCCAUAGAACACCUUUUGGUGCUAUCCCUGGCGAAAUCGAAUACCCUGCCUGCUAUGAAAAAACCGUGUAAAACAG------- -----------((.(((((.((((((((...)))))(((((..((((....))))........((((.............))))..)))))....))).)))))..))..------- ( -21.92, z-score = -1.21, R) >consensus ___________GUUUAAAGUUUUUUCGGAUGGCUGGCAUGUAG_AUUUCAGUCAGCUUUCAGUGGUUAAGCCGCGUAAUCCGAGCUGUAUUUAUGGUUCUUUCAGCCAUUCAGAAAG ..........................((((((((((................((((((...((((.....)))).......))))))..............))))))))))...... (-15.29 = -17.20 + 1.91)
| Location | 3,005,536 – 3,005,635 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 79.39 |
| Shannon entropy | 0.40736 |
| G+C content | 0.41980 |
| Mean single sequence MFE | -24.01 |
| Consensus MFE | -16.70 |
| Energy contribution | -16.27 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3005536 99 + 24543557 UAGAUUUCAGUCAGCUUUCAGUGGUUAAGCCGCGUAAUCCGAGCUGUAUUUAUGGUUCUUUCAGCCAUUCAGAAAGCUGUAAAAAGCGGUUUGCCCAAA ..(((....))).........(((.((((((((........((((......((((((.....))))))......)))).......)))))))).))).. ( -25.96, z-score = -1.97, R) >droSim1.chr3L 2538481 99 + 22553184 UAGAUUUCAGUCAGCUUUCAGUGGUUAAGCCGCGUAAUCCGAGCUGUAUUUAUGGUUCUUUCAGCCAUUCAGAAAGCUGUAAAAAGCGGUUUGCCCAAA ..(((....))).........(((.((((((((........((((......((((((.....))))))......)))).......)))))))).))).. ( -25.96, z-score = -1.97, R) >droSec1.super_2 3009754 99 + 7591821 UAGAUUUCAGUCAGCUUUCAGUGGUUAAGCCGCGUAAUCCGAGCUGUAUUUAUGGUUCUUUCAGCCAUUCAGAAAGCUGUAAAAAGCGGUUUGCCCAAA ..(((....))).........(((.((((((((........((((......((((((.....))))))......)))).......)))))))).))).. ( -25.96, z-score = -1.97, R) >droYak2.chr3L 15263460 99 - 24197627 UAGAUUUCAGUCAGCUUUCAGUGGUUAAGCCGCGUAAUCCGAGCUGUGUUUAUGGUUGUUUCAGCCAUUCAGAAGGCUGUAAGAACCACUUUACCCAAA ...........((((((...((((.....)))).......))))))......(((((.((.(((((........))))).)).)))))........... ( -27.20, z-score = -2.29, R) >droEre2.scaffold_4784 3023148 99 + 25762168 UAGAUUUCAGUCAGCUUUCAGUGGCUAAGCCGCGUAAUCCGAGCUGUAUUUAUGGUUCUUUCAGCCAUUCAGCAUGCUUUAAAAAGUGGUUUCCCCAAA ..(((....))).........(((..(((((((.(((..((.((((.....((((((.....)))))).)))).))..)))....)))))))..))).. ( -24.50, z-score = -1.92, R) >droAna3.scaffold_13337 14189488 80 - 23293914 UGGAUCUGAAAAGGCUUUUGGCAGUUGAGCUGUGUAAUCCAAGCGGUAUUUAUGAACC-----ACCAUAGAAUGGUUUUUUAAAG-------------- (((((((....)).......((((.....))))...))))).......((((.(((((-----(........))))))..)))).-------------- ( -14.50, z-score = 0.50, R) >consensus UAGAUUUCAGUCAGCUUUCAGUGGUUAAGCCGCGUAAUCCGAGCUGUAUUUAUGGUUCUUUCAGCCAUUCAGAAAGCUGUAAAAAGCGGUUUGCCCAAA ...........((((((((.(((((...)))))..................((((((.....))))))...)))))))).................... (-16.70 = -16.27 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:26 2011