| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,986,919 – 2,986,981 |
| Length | 62 |
| Max. P | 0.860620 |
| Location | 2,986,919 – 2,986,981 |
|---|---|
| Length | 62 |
| Sequences | 4 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 94.35 |
| Shannon entropy | 0.09160 |
| G+C content | 0.65323 |
| Mean single sequence MFE | -29.60 |
| Consensus MFE | -27.30 |
| Energy contribution | -27.43 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.860620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2986919 62 - 24543557 CCUCCGCCAGGGAGGAGGUGGGGCACAUCCUUGGGUGCGUGACUUCCGCUUCCUUGGCUCCA .....((((((((((((((.(.((((........)))).).))))))...)))))))).... ( -30.50, z-score = -1.78, R) >droEre2.scaffold_4784 3001948 62 - 25762168 CCUCCACCGGAGAGGAGGUGGGGCACUUCCUUGAGUGCGUGGCUUCCGCUUCCUUGGCUCCA ...(((..((((.((((((.(.((((((....)))))).).)))))).))))..)))..... ( -26.80, z-score = -0.97, R) >droSec1.super_2 2990978 62 - 7591821 CCUCCGCCAGGGAGGAGGUGGGGCACAUCCUUGAGUGCGUGGCUUCCGCUUCCUUGGCUCCA .....((((((((((((((.(.((((........)))).).))))))...)))))))).... ( -30.90, z-score = -1.88, R) >droSim1.chr3L 2519201 62 - 22553184 CCUCCGCCAGGGAGGAGGUGGUGCACAUCCUUGAGUGCGUGGCUUCCGCUUCCUUGGCUCCA .....((((((((((((((..(((((........)))))..))))))...)))))))).... ( -30.20, z-score = -2.36, R) >consensus CCUCCGCCAGGGAGGAGGUGGGGCACAUCCUUGAGUGCGUGGCUUCCGCUUCCUUGGCUCCA .....((((((((((((((.(.((((........)))).).))))))...)))))))).... (-27.30 = -27.43 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:21 2011