| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,979,173 – 2,979,267 |
| Length | 94 |
| Max. P | 0.603165 |
| Location | 2,979,173 – 2,979,267 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 65.07 |
| Shannon entropy | 0.62249 |
| G+C content | 0.45709 |
| Mean single sequence MFE | -22.20 |
| Consensus MFE | -8.73 |
| Energy contribution | -8.73 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.91 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.603165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2979173 94 + 24543557 GAAGGUCGACCAAACCCAAACC-------CAAGCCCAUUUGCCAUUGUCAUCAUGGGGCAAAUGGAAUUUGCCAGUUAACUCUU-CCAUCUGGUCACCUCGU- ((.(((.(((((..........-------.....(((((((((..((....))...)))))))))....((..((......)).-.))..))))))))))..- ( -26.00, z-score = -1.66, R) >droWil1.scaffold_180698 10964928 82 + 11422946 ------------AGAGGACAUU-------UGUCGUUACUUGUCAUUGUCAUUGAGAAAUGGA--AAAUUUAUGUUUUCCCUUUUUCCACCUGAACACUCUUUA ------------((((((((..-------((.((.....)).)).))))...((((((.(((--((((....))))))).))))))..........))))... ( -19.60, z-score = -2.36, R) >droSim1.chr3L 2511393 94 + 22553184 GAAGGUAGACCAAACCCAAACC-------CAAGCCCAUUUGCCAUUGUCAUCAUGGGGCAAAUGGAAUUUGCCAGUUAACUCUU-CCAUCUGGUCACCUCGU- ((.(((.(((((..........-------.....(((((((((..((....))...)))))))))....((..((......)).-.))..))))))))))..- ( -26.00, z-score = -1.65, R) >droSec1.super_2 2983149 94 + 7591821 GAAGGUCGACCAAACCCAAACC-------CAAGCCCAUUUGCCAUUGUCAUCAUGGGGCAAAUGGAAUUUGCCAGUUAACUCUU-CCAUCUGGUCACCUCGU- ((.(((.(((((..........-------.....(((((((((..((....))...)))))))))....((..((......)).-.))..))))))))))..- ( -26.00, z-score = -1.66, R) >droEre2.scaffold_4784 2994097 101 + 25762168 GAAGGUCGGCCAAACCCAAACCAAAAACCCAAACCCAUUUGCCAUUGUCAUCAUGGGGCAAAUGGAAUUCGCCAGUUAACUCUU-CCAUCUGCUCACCUCUU- ..((((.(((........................(((((((((..((....))...)))))))))........((....))...-......))).))))...- ( -21.10, z-score = -0.75, R) >droAna3.scaffold_13337 14164350 79 - 23293914 ---------------GCAGGUC-------GAAGGUCAUCCAUGCCCCUCUGCUAUUCGCAAAUGGAAUUUUGCUGUUAACUCUU-CCAUCUGGUCACCUUUU- ---------------.(((((.-------(((((........((......)).....(((((......))))).......))))-).)))))..........- ( -14.50, z-score = 0.03, R) >consensus GAAGGUCGACCAAACCCAAACC_______CAAGCCCAUUUGCCAUUGUCAUCAUGGGGCAAAUGGAAUUUGCCAGUUAACUCUU_CCAUCUGGUCACCUCGU_ ..................................(((((((((..((....))...)))))))))...................................... ( -8.73 = -8.73 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:19 2011