| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,974,704 – 2,974,803 |
| Length | 99 |
| Max. P | 0.654279 |
| Location | 2,974,704 – 2,974,803 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 77.11 |
| Shannon entropy | 0.41389 |
| G+C content | 0.55308 |
| Mean single sequence MFE | -24.25 |
| Consensus MFE | -17.32 |
| Energy contribution | -18.57 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2974704 99 + 24543557 GAGUUCCAUGGGAAUUAACGCUAAGCUGCAGGAU--------CCAUCUCCUUCGCCAUUCCUUCUUUGGCUGCCGC--------CCUCUGCAACUCCCGUUUUCCCGCCUCCGCC (((.....((((((..((((...((.(((((((.--------.....)))...((((.........))))......--------....)))).))..)))))))))).))).... ( -22.00, z-score = -0.39, R) >droSim1.chr3L 2506950 107 + 22553184 GAGUUCCAUGGGAAUUAACGCUAAGCUGCAGGAUCCUCGUUUCCAUCUCCUUCGCCAUUCCUUCUUCGGCUGCCGC--------CCUUUGCAGCUCCCGUUUUCCCGACUCCGCC (((((....(((((..((((...((((((((((........))).......................(((....))--------)...)))))))..)))))))))))))).... ( -31.10, z-score = -2.81, R) >droSec1.super_2 2978682 107 + 7591821 GAGUUCCAUGGGAAUUAACGCUAAGCUGCAGGAUCCUCGUUUCCAGCUCCUUCGCCAUUCCUUCUUCGGCUGCCGC--------CCUCUGUAGCUCCCGUUUUCCCGCCUCCGCC (((.....((((((..((((...(((((((((.............((......))............(((....))--------).)))))))))..)))))))))).))).... ( -27.20, z-score = -1.08, R) >droYak2.chr3L 15229729 115 - 24197627 GAGUUUCAAGGGAAUUAACGCUAAGCUGCAGAAUCCUCGUUUCCAUCUCCUUCGCCAUUUUUUCUUCGGCCACCGCAGCUCCCACUUCUGCAGCUCCCGUUUUUCCGCCUCCUUC ..........((((..((((...((((((((((.....(....).........(((...........)))...............))))))))))..)))).))))......... ( -24.40, z-score = -1.70, R) >droEre2.scaffold_4784 2989638 107 + 25762168 GAGUUUCAUGGGAAUUAACGCUAAGCUGCAGGAUCGUCGUUUCCAUCUCCUUCGCCAUUCUUUCUUCGGCCAUCGC--------CUUCUGUAGCCCCCAUUUUCCCGCCUCCUCC (((.....((((((..........(((((((((..(.((.............)).)...........(((....))--------)))))))))).......))))))....))). ( -22.25, z-score = -1.09, R) >droAna3.scaffold_13337 14160481 85 - 23293914 GAGUUUCUUGGGAAUUAACGCUAAGCUGCAGAAGA-------CCG--UCCCUCGCAACGCCA-CAUGGAUCUCCGU-----------UUGCAGCUCC--UUUUUCCGC------- ..........((((.........(((((((((...-------..(--(((...((...))..-...)))).....)-----------))))))))..--...))))..------- ( -18.54, z-score = 0.46, R) >consensus GAGUUCCAUGGGAAUUAACGCUAAGCUGCAGGAUCCUCGUUUCCAUCUCCUUCGCCAUUCCUUCUUCGGCCGCCGC________CCUCUGCAGCUCCCGUUUUCCCGCCUCCGCC .........(((((..((((...((((((((((........))).........(((...........)))..................)))))))..)))))))))......... (-17.32 = -18.57 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:18 2011