| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,965,825 – 2,965,922 |
| Length | 97 |
| Max. P | 0.901205 |
| Location | 2,965,825 – 2,965,922 |
|---|---|
| Length | 97 |
| Sequences | 8 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 68.82 |
| Shannon entropy | 0.58352 |
| G+C content | 0.40736 |
| Mean single sequence MFE | -23.35 |
| Consensus MFE | -12.56 |
| Energy contribution | -12.13 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2965825 97 + 24543557 --UUAUUCCCUGGCUCUGUUU-UGGCUCCAUUAGCUGGAUUGUCUUGGCCAUAAUGGAGUUAAUAC--------AUAUGUAUAUGUAUGCAGGAGCUGCCUUUGAUCC --.........((((((((.(-(((((((((((((..(......)..))..)))))))))))).))--------...(((((....)))))))))))........... ( -29.80, z-score = -1.94, R) >droSim1.chr3L 2505439 97 + 22553184 --UUAUUCCCUGGCUCUGUUU-CGGCUCUAUUAGCUGGAUUGUCUUGGCCAUAAUGGAGUUAAUAC--------AUAUGUAUAUGUAUGCAGGAGCUGCCUUUGAUCC --....((...(((...((((-(((((((((((((..(......)..))..)))))))))).((((--------(((....)))))))...))))).)))...))... ( -27.40, z-score = -1.33, R) >droSec1.super_2 2977181 97 + 7591821 --UUAUUCCCUGGUUCUGUUU-CGGCUCUAUUAGCUGGAUUGUCUUGGCCAUAAUGGAGUUAAUAC--------AUAUGUAUAUGUAUGCAGGAGCUGCCUUUGAUCC --....((...(((...((((-(((((((((((((..(......)..))..)))))))))).((((--------(((....)))))))...))))).)))...))... ( -25.80, z-score = -1.11, R) >droYak2.chr3L 15228214 106 - 24197627 --UUAUACCCUCGCUCCGUUUUCGGCUCUAUUAGCUGGAUUGUCUUGGCCAUAAUGGAGUUAAUACUCUCGUACAUAUGUAUAUGUAUGCAGGAGCUGCCUUUCAUCC --..........(((((((..(..(((((((((((..(......)..))..)))))))))..).))...((((((((....))))))))..)))))............ ( -29.60, z-score = -2.19, R) >droEre2.scaffold_4784 2988156 88 + 25762168 --UUAUUCCCUGUCUCUGUUU-CGGCUCUAUUAGCUGGAUUGUCUUGGCCAUAAUGGAGUUAAUAC--------AUAUGUAUAUGUAUGCAGGAGUGGU--------- --(((((((.(((........-.((((((((((((..(......)..))..)))))))))).((((--------(((....))))))))))))))))).--------- ( -24.80, z-score = -1.65, R) >droAna3.scaffold_13337 14159256 98 - 23293914 ------GGUCGGACUCUGUUUUCGGCUCUAUUAGCUGGAUUGUCUUGGCCAUAAUGGAGUUAAUAU----GUAUGUAUGUAUAUGUAUGCAGGAACUGUCUUUGAUCC ------((((((((...((((..((((((((((((..(......)..))..)))))))))..((((----((((....))))))))...)..)))).))))..)))). ( -26.20, z-score = -1.52, R) >droWil1.scaffold_180698 434476 87 - 11422946 UCCCUUUUGUGUUCAGUGCCUUUAUCUCUAUUAGCCGUAUUGUCUUGGCCAUAAUGGAGUUAAUAU--------GUUUUCUGCUGCCUUUGAUCC------------- ..........((.(((.((..(((.((((((((((((........))))..)))))))).)))...--------))...)))..)).........------------- ( -16.00, z-score = -1.75, R) >droMoj3.scaffold_6680 2995099 78 - 24764193 -------UUUUUCUUAUGCUGCCAUCUUU-UUAGCCAGAUUGUCUUGGCCAUAAUGACACUAAUAU--------AUUUCUAGCUGCCUUUGAUC-------------- -------....((..(.((.((.......-...(((((......)))))(.....)..........--------.......)).)).)..))..-------------- ( -7.20, z-score = 1.49, R) >consensus __UUAUUCCCUGGCUCUGUUU_CGGCUCUAUUAGCUGGAUUGUCUUGGCCAUAAUGGAGUUAAUAC________AUAUGUAUAUGUAUGCAGGAGCUGCCUUUGAUCC ..............(((......(((((((((((((((......)))))..))))))))))................(((((....)))))))).............. (-12.56 = -12.13 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:17 2011