Locus 5994

Sequence ID dm3.chr3L
Location 2,945,151 – 2,945,242
Length 91
Max. P 0.890797
window8243

overview

Window 3

Location 2,945,151 – 2,945,242
Length 91
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 85.91
Shannon entropy 0.27450
G+C content 0.46086
Mean single sequence MFE -28.17
Consensus MFE -23.21
Energy contribution -23.93
Covariance contribution 0.72
Combinations/Pair 1.15
Mean z-score -1.74
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.10
SVM RNA-class probability 0.890797
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 2945151 91 - 24543557
GGCGUGUUGUGUUAGCAUUUCUCAUUUUCGGUUGGGUUGCAU-GGGGAAUAUGGUAAUUCCUGGAAGAUAUUUGGCACACACAUGCUGCCAC
(((((((((((((((((...((((........)))).))).(-.((((((......)))))).)........))))))).)))))))..... ( -28.70, z-score =  -1.85, R)
>droAna3.scaffold_13337 14139361 81 + 23293914
GGCGUGUCGUGUGUUAGCUUUUCUUUUGGAAGGGAAUU-----CUGGAA----GGGAUUCCUGGAAGAUUCUC--CACACACAUGCUGCCGC
(((((((.(((((..((....((((((....(((((((-----((....----)))))))))))))))..)).--))))))))))))..... ( -28.30, z-score =  -2.05, R)
>droEre2.scaffold_4784 2967403 91 - 25762168
GGCGUGUUGUGUUAGCAUUUCUCAUUUUGGAUUGGGUUGCAU-GGGGAAUAUGGUAAUUCCUGGAAGAUAUUUGGCACACACAUGCUGCCAC
(((((((((((((((((...((((........)))).))).(-.((((((......)))))).)........))))))).)))))))..... ( -28.70, z-score =  -1.83, R)
>droYak2.chr3L 15207064 92 + 24197627
GGCGUGUUGUGUUAGCAUUUAUCAUUUUGGAUUGGGUUGCAUGGGGGAAUAUGAUAAUUCCUGGAAGAUAUUUGGCACACACAUGCUGCCAC
(((((((((((((((....((((.(((..(...((((((((((......)))).)))))))..))))))).)))))))).)))))))..... ( -26.20, z-score =  -1.26, R)
>droSec1.super_2 2956586 91 - 7591821
GGCGUGUUGUGUUAGCAUUUCUCAUUUUGGAUUGGGUUGCAU-GGGGAAUCUGGUAAUUCCUGGAAGAUAUUUGGCACACACAUGCUGCCAC
(((((((((((((((((...((((........)))).))).(-.((((((......)))))).)........))))))).)))))))..... ( -28.40, z-score =  -1.62, R)
>droSim1.chr3L 2484899 91 - 22553184
GGCGUGUUGUGUUAGCAUUUCUCAUUUUGGAUUGGGUUGCAU-GGGGAAUAUGGUAAUUCCUGGAAGAUAUUUGGCACACACAUGCUGCCAC
(((((((((((((((((...((((........)))).))).(-.((((((......)))))).)........))))))).)))))))..... ( -28.70, z-score =  -1.83, R)
>consensus
GGCGUGUUGUGUUAGCAUUUCUCAUUUUGGAUUGGGUUGCAU_GGGGAAUAUGGUAAUUCCUGGAAGAUAUUUGGCACACACAUGCUGCCAC
(((((((((((((((((...((((........)))).)))....((((((......))))))..........))))))).)))))))..... (-23.21 = -23.93 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:11 2011