| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,938,895 – 2,938,957 |
| Length | 62 |
| Max. P | 0.721293 |
| Location | 2,938,895 – 2,938,957 |
|---|---|
| Length | 62 |
| Sequences | 8 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 84.21 |
| Shannon entropy | 0.29470 |
| G+C content | 0.50236 |
| Mean single sequence MFE | -17.61 |
| Consensus MFE | -15.90 |
| Energy contribution | -16.65 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.721293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2938895 62 + 24543557 ------CGAAACCAGAACUGCGUGGUUGCGUACAGUGGCCUACUAUGGUAGAUCUGGACACUCACAGA------- ------.....(((((.(((((((((..(.....)..))).))....)))).)))))...........------- ( -19.20, z-score = -1.40, R) >droSec1.super_2 2950358 62 + 7591821 ------CGAAACCAGAACUGCGUGGUUGCGUACAGUGGCCUACUAUGGUAGAUCUGGACACCCACAGA------- ------.....(((((.(((((((((..(.....)..))).))....)))).)))))...........------- ( -19.20, z-score = -1.35, R) >droYak2.chr3L 15200630 62 - 24197627 ------CGAAACCAGAACUGCGUGGUUGCGUACAGUGGCCUACUAUGGUAGAUCUGGACACUCACAGA------- ------.....(((((.(((((((((..(.....)..))).))....)))).)))))...........------- ( -19.20, z-score = -1.40, R) >droEre2.scaffold_4784 2961108 62 + 25762168 ------CGAAACCAGAACUGCGUGGUUGCGUACAGUGGCCUACUAUGGUAGAUCUGGACACUCACAGA------- ------.....(((((.(((((((((..(.....)..))).))....)))).)))))...........------- ( -19.20, z-score = -1.40, R) >droAna3.scaffold_13337 14133231 69 - 23293914 ------CGAAACCAGAACUGCGUGGUUGCGUACAGUGGCCUACUAUGGUAGAUCUGGACAUACACACCAUAUAUA ------.....(((((.(((((((((..(.....)..))).))....)))).))))).................. ( -19.20, z-score = -1.35, R) >droWil1.scaffold_180698 402049 68 - 11422946 CUACCUAUCGACCAGAACUGCGUGGUUGCGUACAGUGGCCUACUAUGGUAGAUCUGGACACGGCCAGA------- (((((..((.....)).....(((((..(.....)..))).))...))))).(((((......)))))------- ( -20.10, z-score = -0.42, R) >droMoj3.scaffold_6680 2964743 59 - 24764193 ------AGUAAAGAGAAAUGCGUGGUUGCGUACAGUGGCCUACUAUGGUAGAUCUGGACACAAAC---------- ------.((..(((....((((((((..(.....)..))).))....)))..)))..))......---------- ( -12.40, z-score = -0.30, R) >droGri2.scaffold_15110 19500907 55 + 24565398 ------AGUAAAGAGAAAUGCGUGGUUGCGUACAGUGGCCUACUAUGGUAGAUCUGGACAC-------------- ------.((..(((....((((((((..(.....)..))).))....)))..)))..))..-------------- ( -12.40, z-score = -0.50, R) >consensus ______CGAAACCAGAACUGCGUGGUUGCGUACAGUGGCCUACUAUGGUAGAUCUGGACACUCACAGA_______ ...........(((((.(((((((((..(.....)..))).))....)))).))))).................. (-15.90 = -16.65 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:07 2011