| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,938,114 – 2,938,214 |
| Length | 100 |
| Max. P | 0.516762 |
| Location | 2,938,114 – 2,938,214 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 93.51 |
| Shannon entropy | 0.12335 |
| G+C content | 0.36250 |
| Mean single sequence MFE | -26.13 |
| Consensus MFE | -20.17 |
| Energy contribution | -21.12 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516762 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2938114 100 - 24543557 -UCGAUUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG---CUUGUGUGCGAAUUA-UCACUUUGGCAUACUGUUGUUUUGGAUUUUGGAACUGCU -.......(((((.((((...(((((.((..((((((.((((.....---.)))).))))))...-))))))).)))).)))))((((..(...)..)))).... ( -26.10, z-score = -1.77, R) >droSim1.chr3L_random 162162 100 - 1049610 -UCGAUUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG---UUUGUGUGCGAAUUA-UCACUUUGGCAUACUGUAGUUUUGGAUUUUGGAACUGCU -........((((.((((...(((((.((..((((((.(((((....---))))).))))))...-))))))).)))).))))(((((..(...)..)))))... ( -26.90, z-score = -2.26, R) >droSec1.super_2 2949567 100 - 7591821 -UCGAUUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG---UUUGUGUGCGAAUUA-UCACUUUGGCAUACUGUAGUUUUGGAUUUUGGAACUGCU -........((((.((((...(((((.((..((((((.(((((....---))))).))))))...-))))))).)))).))))(((((..(...)..)))))... ( -26.90, z-score = -2.26, R) >droYak2.chr3L 15199787 100 + 24197627 -UCGAUUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG---UUUGUGUGCGAAUUA-UCACUUUGGUAUACUGUAGUUUUGGAUUUUGGAACUGCU -.................((..((((.((..((((((.(((((....---))))).))))))...-))))))..)).....(((((((..(...)..))))))). ( -25.40, z-score = -2.11, R) >droEre2.scaffold_4784 2960310 100 - 25762168 -UCGAUUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG---UUUGUGUGCGAAUUA-UCACUUUGGCAUACUGUAGUUUUGGAUUUUGGAACUGCU -........((((.((((...(((((.((..((((((.(((((....---))))).))))))...-))))))).)))).))))(((((..(...)..)))))... ( -26.90, z-score = -2.26, R) >droAna3.scaffold_13337 14132369 104 + 23293914 UUGUUUUGAACAGAAUGCAUUGGAGGGAUGUUUCGUAAACAAAAAAGGAUUGUGUGUGCGAGUUAUUCACUUUGGCAUACU-UGCUUUUGGAUUUUGGAACUGCU ..((((..(((((((.((((..((((((((.((((((.((((.......))))...)))))).))))).)))..)......-))))))))...))..)))).... ( -24.60, z-score = -1.08, R) >consensus _UCGAUUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG___UUUGUGUGCGAAUUA_UCACUUUGGCAUACUGUAGUUUUGGAUUUUGGAACUGCU .........((((.((((...(((((.((..((((((.(((((.......))))).))))))....))))))).)))).))))(((((..(...)..)))))... (-20.17 = -21.12 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:06 2011