| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,228,798 – 4,228,888 |
| Length | 90 |
| Max. P | 0.583659 |
| Location | 4,228,798 – 4,228,888 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 75.96 |
| Shannon entropy | 0.41289 |
| G+C content | 0.57294 |
| Mean single sequence MFE | -30.76 |
| Consensus MFE | -20.10 |
| Energy contribution | -21.86 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.583659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4228798 90 - 23011544 CCAAUUAACUGUACUCGAAGUGGACUUGGCUUAGCUUGGCCAAGUAGGUCUGCUCGACCAUCCGCGGCGUA--CUAGCCAGC---CAGUCCCCUU---- .......((((........((((((((((((......)))))))).((((.....))))..))))(((...--...)))...---))))......---- ( -31.50, z-score = -2.04, R) >droEre2.scaffold_4929 4302260 83 - 26641161 CCAAUUAACUGUACUCGAAGUGGACUUGGCUUGGC-CAAGUAUGUAGGUCUGCUCGGCCAUCCGCGGAGUACGCAAGUCCCCUU--------------- ..........((((((...(((((((((((...))-))))).....((((.....))))..)))).))))))............--------------- ( -28.00, z-score = -1.61, R) >droYak2.chr2L 4254326 84 - 22324452 CCAAUUAACUGUACUCGACUGGGAGUUGACUGGGCAUGGCCAAGUAGGGCGGCUCGGCCAUCCGCGGAGUACGCAAGUCCCCUU--------------- ....................((((.((.....((.((((((.(((......))).))))))))(((.....))))).))))...--------------- ( -27.10, z-score = 0.39, R) >droSec1.super_5 2326031 99 - 5866729 CCAAUUAACUGUACUCGAAGUGGACUUGGCUUGGCAUGGCCAAGUAGGUCUGCUCGGCCAUCCGCGGAGUACGCCAGCCAGUCGUCACUCCCCUCCCUU ...................(((((..(((((.((((.((((.....)))))))).))))))))))((((((((.(.....).))).)))))........ ( -34.70, z-score = -1.62, R) >droSim1.chr2L_random 209660 99 - 909653 CCAAUUAACUGUACUCGAAGUGGACUUGGCUUGUCGUGGCCAAGUAGGUCUGCUCGGCCAUCCGCGGAGUAAGCCAGCCAGCCGUCAGUCCCCUCCCUU .......((((....((...(((((((((((......)))))))).((..(((((.((.....)).)))))..))..)))..)).)))).......... ( -32.50, z-score = -1.24, R) >consensus CCAAUUAACUGUACUCGAAGUGGACUUGGCUUGGCAUGGCCAAGUAGGUCUGCUCGGCCAUCCGCGGAGUACGCAAGCCAGCCG_CA_UCCCCU_____ ..........((((((...((((((((((((......)))))))).((((.....))))..)))).))))))........................... (-20.10 = -21.86 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:44 2011