| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,923,073 – 2,923,136 |
| Length | 63 |
| Max. P | 0.719200 |
| Location | 2,923,073 – 2,923,136 |
|---|---|
| Length | 63 |
| Sequences | 7 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 68.90 |
| Shannon entropy | 0.58623 |
| G+C content | 0.40098 |
| Mean single sequence MFE | -12.85 |
| Consensus MFE | -6.17 |
| Energy contribution | -6.07 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.73 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.719200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2923073 63 + 24543557 ----UUUGCAUACGCAAUUAUGCGAUAAUUGCCACAAGGUU-CCCAGCCCCAAAAUGUAUGCUACAAA---- ----...((((((((((((((...)))))))).....(((.-....))).......))))))......---- ( -15.90, z-score = -2.71, R) >droSim1.chr3L 2476143 63 + 22553184 ----UUUGCAUACGCAAUUAUGCGAUAAUUGCCACAAGGUU-CCCAGCCCCAAAAUGUAUGCUACAAA---- ----...((((((((((((((...)))))))).....(((.-....))).......))))))......---- ( -15.90, z-score = -2.71, R) >droSec1.super_2 2942807 63 + 7591821 ----UUUGCAUACGCAAUUAUGCGAUAAUUGCCACAAGGUU-CCCAGCCCCAAAAUGUAUGGUACAAA---- ----....(((((((((((((...)))))))).....(((.-....))).......))))).......---- ( -12.80, z-score = -0.75, R) >droYak2.chr3L 15192861 64 - 24197627 ----UUUGCAUACGCAAUUAUUCGAUAAUUGCCACAAUGUUUCCCAGCCCCCAAAUGUAUGCUACAAA---- ----...((((((((((((((...))))))))......((......))........))))))......---- ( -12.60, z-score = -3.03, R) >droAna3.scaffold_13337 14125311 67 - 23293914 UCAGUGAAGCUCUGCAAUUAGACGAUAAUUGCCAAUCAGCUGAGG-GCCCCAAAAAGUGUGCUAUAAA---- (((((........(((((((.....)))))))......))))).(-(((.(.....).).))).....---- ( -12.14, z-score = 0.24, R) >droWil1.scaffold_180698 393898 66 - 11422946 ----UCUGUAUGUAUAAUUAUGCGAUAAUUGCCUGGCAGUU--GCGACCGAAAAAAAUAUAUAUGGGAUGAA ----(((((((((((.......((.(((((((...))))))--)))..........)))))))))))..... ( -12.83, z-score = -1.05, R) >droVir3.scaffold_13049 15078348 63 + 25233164 ----UGUGUGUGUGCAAUUCUACUAUAAU-AAAAACAGGCUGGGCCGCCCCAAAAAGUAUGCUUUAAA---- ----...((.(((................-....))).))((((....)))).((((....))))...---- ( -7.75, z-score = 1.80, R) >consensus ____UUUGCAUACGCAAUUAUGCGAUAAUUGCCACAAGGUU_CCCAGCCCCAAAAUGUAUGCUACAAA____ .......(((((((((((((.....)))))))......((......))........)))))).......... ( -6.17 = -6.07 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:05 2011