| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,920,328 – 2,920,437 |
| Length | 109 |
| Max. P | 0.507813 |
| Location | 2,920,328 – 2,920,437 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 75.78 |
| Shannon entropy | 0.43972 |
| G+C content | 0.36219 |
| Mean single sequence MFE | -18.43 |
| Consensus MFE | -11.47 |
| Energy contribution | -11.23 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.507813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2920328 109 + 24543557 AAUUAGAACACGACACUGGGAGAAAUAGUACAAGAAACUAACAAGCACUUUUCUAAGUGCUAAGAGUUAUAUAUAAAUAUCACCUAGUGUGAACAACCUUCACAGUUUA .....((((...((((((((.((..((((.......))))...(((((((....)))))))..................)).))))))))(((.....)))...)))). ( -24.70, z-score = -2.70, R) >droEre2.scaffold_4784 2950336 92 + 25762168 AAUUAGAACACGACACUGAGAGAAAUAAUGCAAGAAGC----AAGCACUACACUAAUUGCUAAGUUUU---------UAAUCUUCAGUGUGACCAGCAUCCACAG---- ............(((((((.(((.....(((.....))----)((((..........)))).......---------...))))))))))...............---- ( -15.10, z-score = -0.51, R) >droYak2.chr3L 15190016 109 - 24197627 AAUUAGAACAAGACACUGAGAGAAAUAGUACGAGAAACUAACAAGCAGUUUCCUAAUUGCAAAGCGUUGGACAGAAAUAACUUUUAGUGUGACCAGCCUCCACAGUUGG ............((((((((((...((((.......))))....((((((....))))))....................))))))))))..(((((.......))))) ( -22.90, z-score = -1.40, R) >droSec1.super_2 2940097 98 + 7591821 AAUUAGAACACGACACUGGGAGAAACAGUACAAGAAACUAACAAGCACUAUUCUAAUUGCUAAGAGUUAUAGAUAAAAAACCCCUAGUGUGAACAACG----------- ............((((((((.(.............((((....((((..........))))...)))).............)))))))))........----------- ( -14.37, z-score = -1.11, R) >droSim1.chr3L 2473392 109 + 22553184 AAUUAGAGCACGACACUGGGAGAAACAGUACAAGAAACUAACAAGCACUAUUCUAAUUGCUAAGAGUUAUAGAUAAAUAAACCCUAGUGUGAACAACGAUCACAGUUUA .....((((...((((((((.(.............((((....((((..........))))...)))).............)))))))))((.......))...)))). ( -15.07, z-score = 0.19, R) >consensus AAUUAGAACACGACACUGGGAGAAAUAGUACAAGAAACUAACAAGCACUAUUCUAAUUGCUAAGAGUUAUAGAUAAAUAACCCCUAGUGUGAACAACCUCCACAGUU__ ............((((((((...............((((....((((..........))))...))))..............))))))))................... (-11.47 = -11.23 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:04 2011