| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,919,506 – 2,919,601 |
| Length | 95 |
| Max. P | 0.969383 |
| Location | 2,919,506 – 2,919,601 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 63.87 |
| Shannon entropy | 0.62917 |
| G+C content | 0.33495 |
| Mean single sequence MFE | -21.34 |
| Consensus MFE | -10.26 |
| Energy contribution | -10.18 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.969383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2919506 95 + 24543557 AUUGCAGGCACAGUUUCG--UGAUAAAUAAAUAGU-GUGU------UUAUGUGUUA-----AAAUAAACAAAAUUUCUGUUUUGUGCACCCAUUGAAAGGGUGCGCUGC ...((((((((.((((.(--(.....)))))).))-))((------((((......-----..)))))).......))))...((((((((.......))))))))... ( -26.10, z-score = -2.28, R) >droAna3.scaffold_13337 14121716 103 - 23293914 AUUUGCUCAAGUGUCUUAACUAAAUCAUACAAAAUCAUACAAAUUGUUGCAAAUUA-----ACGCGAACCAAUUUUUUACUA-GUGUACUUAUCGAAUGGGACUGCACU ...(((......((((((.........((((.........((((((((((......-----..))))..)))))).......-.)))).........)))))).))).. ( -12.40, z-score = 0.62, R) >droEre2.scaffold_4784 2949470 95 + 25762168 ----------ACGUUUCA--UGGUAAAUAAAUUGU-GUAGUGACCAUUAUAAGUUACAAUUAAAUAAACGAAAUUUC-AUUUUUUGCGCCCAUUGAAAGGGUGCGCUAC ----------.(((((((--..((......))..)-)..(((((........)))))........))))).......-.......((((((.......))))))..... ( -20.20, z-score = -1.37, R) >droSec1.super_2 2939241 93 + 7591821 AUUUAAGGCAAGGUCUCA--UGAUAAAUAAAUAGU-GU--------UUAUGAGUUU-----AAAUAAACGGACUUUCUGUUUUGUGCACCCAUUGAAAGGGUGUGCUAU ....((((((((((((..--(.(((((((.....)-))--------)))).)((((-----....))))))))))..))))))(..(((((.......)))))..)... ( -23.60, z-score = -2.39, R) >droSim1.chr3L 2472536 95 + 22553184 AUUUAAGGCAAAGUCUCA--UGAUAAAUAAAUAGU-GUGU------UUAUGAGUUA-----AAAUAAACGGAAUUUCUGUUUUGUGCACCCAUUGAAAGGGUGUGCCAC ......(((.....((((--(((...(((.....)-))..------)))))))...-----....((((((.....))))))...((((((.......))))))))).. ( -24.40, z-score = -2.79, R) >consensus AUUUAAGGCAAAGUCUCA__UGAUAAAUAAAUAGU_GUAU______UUAUGAGUUA_____AAAUAAACGAAAUUUCUGUUUUGUGCACCCAUUGAAAGGGUGUGCUAC ...................................................................................((((((((.......))))))))... (-10.26 = -10.18 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:03 2011