| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,917,671 – 2,917,763 |
| Length | 92 |
| Max. P | 0.519730 |
| Location | 2,917,671 – 2,917,763 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 72.37 |
| Shannon entropy | 0.48199 |
| G+C content | 0.30402 |
| Mean single sequence MFE | -18.84 |
| Consensus MFE | -12.81 |
| Energy contribution | -13.53 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.19 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519730 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2917671 92 + 24543557 UUGUUUAGGUUUUGAAUUUCCCGAUGAUCUGGUCACACUUUGCCAAUGACAAGUGUGACUUAUUAAUUUAAGUUAUUAUCAUAAAUUGUGUA--------------------- ..((((((((....(((((.....((((..((((((((((..........)))))))))).))))....)))))...))).)))))......--------------------- ( -15.20, z-score = -0.13, R) >droEre2.scaffold_4784 2947598 98 + 25762168 UGGUUUAGAAUCUGCAUUUUUUGAUGACCUGGUCACACUUUGUCAAUGGAAAGUGUGACUUACUUAUUUGAGUAAUCAACAUAAACUAUGAGGUGGAG--------------- ..........(((.((((....))))(((((((((((((((........)))))))))))...((((((((....)))).))))......))))))).--------------- ( -23.40, z-score = -1.23, R) >droYak2.chr3L 15187193 112 - 24197627 UGGUUUGCAUUCUGAAUUAUCCAAUGACCUGGUCACACAUUGUCAAUGGAAAGUGUGACU-AUAUAUUUAAGUUAUCAACAUAAAUUGUACAACCUAAUACUAAAAUAUAGAG .((((((((..........((((.((((.((......))..)))).))))..((((((((-.........))))))..))......)))).)))).................. ( -17.90, z-score = 0.24, R) >droSec1.super_2 2937362 104 + 7591821 UUGUUUAGAUUU-GAAUUUUCCUAUGACCUGGUCACAGUUUGUCAAUGAAAAGUGUGACCUAUUAAUUUAAGUUAUUAUCAUAAAUUGUACACUUAAAUGUAGUG-------- ..((((((((..-.(((((....((.....(((((((.(((........))).))))))).....))..)))))...))).)))))....((((.......))))-------- ( -19.10, z-score = -1.13, R) >droSim1.chr3L 2470657 105 + 22553184 UUGUUCAGUUUUUGAAUUUUCCUAUGACCUGGUCAAACUUUGUCAAUGAAAAGUGUGACCUAUUAAUUUAAGUUAUUAUCAUAAAUUGUACACUUAAAUGUAGUG-------- .(((.((((((.(((...............(((((.(((((........))))).)))))...((((....))))...))).)))))).))).............-------- ( -18.60, z-score = -1.30, R) >consensus UUGUUUAGAUUUUGAAUUUUCCGAUGACCUGGUCACACUUUGUCAAUGAAAAGUGUGACUUAUUAAUUUAAGUUAUUAUCAUAAAUUGUACACUUAAAU______________ ..(((((.......(((((...........(((((((((((........))))))))))).........))))).......)))))........................... (-12.81 = -13.53 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:02 2011