| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,916,398 – 2,916,492 |
| Length | 94 |
| Max. P | 0.557223 |
| Location | 2,916,398 – 2,916,492 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 57.06 |
| Shannon entropy | 0.59496 |
| G+C content | 0.36645 |
| Mean single sequence MFE | -20.70 |
| Consensus MFE | -15.27 |
| Energy contribution | -12.62 |
| Covariance contribution | -2.65 |
| Combinations/Pair | 1.62 |
| Mean z-score | -0.06 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2916398 94 + 24543557 -----CGGUAGUGGUACUUUUGUCGGUAGAUGUGCCCUUGGUCUUUUCCUUC---UCGGA----UUUAUUUUGCUGCAACAGAUCCUCUUCGAUCGUUGAGCUUAU------------ -----....((.(((((.((((....)))).)))))))........(((...---..)))----........(((.((((.((((......)))))))))))....------------ ( -19.30, z-score = 0.36, R) >dp4.chr4_group1 4938068 118 + 5278887 CUGCGAGAUGGUUGUCUGGUCGGUGCUGGACUUAGUUUUAAUUUCAUUAUUUAAUUCAGACAUUUUUGUUCGGUUUUGAUCGUUCGAUUUCAAUUACUAUUUUUCGGUUCUUGAAUAU (((.((((((((((..(((((((.(((((((...((((.((((.........)))).))))......))))))).)))))))..)).........)))))))).)))........... ( -21.80, z-score = -0.29, R) >droPer1.super_5 6534357 118 - 6813705 CUGCGAGAUGGUUGUCUGGUCGGUGCUGGACUUAGUUUUAAUUUCAUUAUUUAAUUCAGACAUUUUUGUUUGGUUUUGAUCGUUCGAUUUCAAUUAAUAUUUUUCGGUUAUUGAAUAU ...(((.(((((((((..((....))..)))........................(((((((....)))))))....)))))))))..((((((.(((........)))))))))... ( -21.00, z-score = -0.26, R) >consensus CUGCGAGAUGGUUGUCUGGUCGGUGCUGGACUUAGUUUUAAUUUCAUUAUUUAAUUCAGACAUUUUUGUUUGGUUUUGAUCGUUCGAUUUCAAUUAAUAUUUUUCGGUU_UUGAAUAU ......((.(((((..(((((((.(((((((....................................))))))).)))))))..)))))))........................... (-15.27 = -12.62 + -2.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:59:01 2011