| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,894,864 – 2,894,971 |
| Length | 107 |
| Max. P | 0.604420 |
| Location | 2,894,864 – 2,894,971 |
|---|---|
| Length | 107 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 70.25 |
| Shannon entropy | 0.61429 |
| G+C content | 0.61048 |
| Mean single sequence MFE | -40.37 |
| Consensus MFE | -19.11 |
| Energy contribution | -20.73 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.48 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2894864 107 - 24543557 -UCGCCGACGUCGUGGUGAGUUU-GCGGCCAGCUGAUGGCCGACGAGUACACGGCGUUUCGAAAAGUCGCCACUGGCGGAGGGCCUGGGAAAAGCACCAGAACAAACGG -..(((..(((((((((((.(((-.((((((.....)))))).((((.((.....)))))).))).))))))).))))...)))((((........))))......... ( -43.20, z-score = -1.31, R) >droWil1.scaffold_180702 2323389 102 + 4511350 -CAACUGGCAUGUGGAUGG-----CCGUCCGUCUGUUGGUCGGAAAGCAAACG-CUUGGAAGAAAGCUGCGACAUCUAAAGCGUUUGGGAUUUGCGUAAUACCAACUGG -..((..(((..(((((..-----..)))))..)))..))(((....((((((-((((((.(..........).))).)))))))))(((((.....))).))..))). ( -27.60, z-score = 0.18, R) >droSim1.chr3L 2447773 107 - 22553184 -UCGCCGACGUCGUGGUGAGUUU-GCGGCCAGCUGAUGGCCGACGAGCACACGGCGUUUCGAAAAGUCGCCAGGGGCGGAGGGCCUUGGAAAAGCACCAGAACAAACGG -(((..(((((((((....((((-(((((((.....)))))).))))).))))))))).)))...((..((((((.(....).))))))....)).............. ( -43.20, z-score = -1.07, R) >droSec1.super_2 2914835 107 - 7591821 -UCGCCGACGUCGUGGUGAGUUU-GCGGCCAGCUGAUGGCCGACGAGCACACGGCGUUUCGAAAAGCCGACAGGGGCGGAGGGCCUUGGAAAAGCACCAGAACAAACGG -((((((((((((((....((((-(((((((.....)))))).))))).)))))))))........((....))))))).((..(((....)))..))........... ( -44.40, z-score = -1.72, R) >droYak2.chr3L 15163642 108 + 24197627 -UCGCCGACGCCGUGGUGAGUUUCUCGACCAGCUGAUGGCCGAUGAGCACACGGCGUUUCGAAAAGCCACCAGGGGCGGCGGGUCUGGGAGAAGCACUACAGCAAACGG -...(((..((.((((((..((((((((((.(((((..((((.((....))))))...)).....(((......)))))).)))).))))))..)))))).))...))) ( -43.60, z-score = -1.25, R) >droEre2.scaffold_4784 2924705 106 - 25762168 -UCGCCGACGUCGUGGUGAGUUU-UCGGCCAGCUGAUGGCCGAUGAGCACACGGCG-UUCGAAAAGCCACCAGGGGCGGCGGGUCUGGGAAAAGCACUAGCGCAAAAGG -((((((((((((((....((((-(((((((.....))))))).)))).)))))))-))......(((......))))))))((((((........)))).))...... ( -44.70, z-score = -1.73, R) >droAna3.scaffold_13337 14100514 95 + 23293914 GCUGUCGCCGUCGUGGUGAGUUU-GCGGCCAGCUGAUGGCAGAGGAGAGUCCGCCACUGCCAAAAGCCACCAGGGGCGGAGUGCGCAUACUAACGG------------- ((..(((((..(.(((((.((((-.(((....))).((((((.((.(....).)).)))))).))))))))).))))))...))............------------- ( -35.90, z-score = 0.16, R) >consensus _UCGCCGACGUCGUGGUGAGUUU_GCGGCCAGCUGAUGGCCGACGAGCACACGGCGUUUCGAAAAGCCGCCAGGGGCGGAGGGCCUGGGAAAAGCACCAGAACAAACGG ...((((((((((((.((.......((((((.....)))))).....))))))))))).......(((......)))....)))......................... (-19.11 = -20.73 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:59 2011