| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,887,263 – 2,887,361 |
| Length | 98 |
| Max. P | 0.581576 |
| Location | 2,887,263 – 2,887,361 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 77.92 |
| Shannon entropy | 0.40045 |
| G+C content | 0.39917 |
| Mean single sequence MFE | -25.65 |
| Consensus MFE | -13.64 |
| Energy contribution | -15.00 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.581576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2887263 98 - 24543557 -------AUUUUUUUUUUUUUUGUUAUUUUGGCCU---GCCCGGCGGCCGCAUAUUAAUUAUGAUACUCAUAUUUGAUUUGGCUUGGGCAAC-GCCGCAAUUACCAUUU -------...............((.(((.((((.(---(((((..(((((...(((((.((((.....)))).))))).)))))))))))..-)))).))).))..... ( -27.20, z-score = -2.43, R) >droEre2.scaffold_4784 2917083 87 - 25762168 ------------------AUUUUUUUUUUUUGCUU---GCCCGGCGGCCGCAUAUUAAUUAUGAUACUCAUAUUUGAUUUGGCUUGGGCAAC-GCCGCAAUUAUCAUUU ------------------...........((((((---(((((..(((((...(((((.((((.....)))).))))).)))))))))))).-...))))......... ( -24.10, z-score = -2.28, R) >droYak2.chr3L 15154506 99 + 24197627 ------AUUUUUUUCUGUUUUUUUUUUUUUUGCUU---GCCCGGCGGCCGCAUAUUAAUUAUGAUACUCAUAUUUGAUUUGGCUUGGGCAAC-GCCGCAAUUACCAUUU ------.......................((((((---(((((..(((((...(((((.((((.....)))).))))).)))))))))))).-...))))......... ( -24.10, z-score = -2.22, R) >droSec1.super_2 2907459 94 - 7591821 -----------AUUUUUUUGUUGCUGUUUUGGCCU---GCCCGGCGGCCGCAUAUUAAUUAUGAUACUCAUAUUUGAUUUGGCUUGGGCAAC-ACCGCAAUUACCAUUU -----------.......(((((((.....((((.---((...))))))((..(((((.((((.....)))).)))))...))...))))))-)............... ( -24.80, z-score = -1.15, R) >droSim1.chr3L 2440307 94 - 22553184 -----------AUUUUUUUGUUGUUGUUUUGGCCU---ACCCGGCGGCCGCAUAUUAAUUAUGAUACUCAUAUUUGAUUUGGCUUGGGCAAC-ACCGCAAUUACCAUUU -----------......((((((((((((.((((.---.......))))((..(((((.((((.....)))).)))))...))..)))))))-)..))))......... ( -23.30, z-score = -1.28, R) >dp4.chrXR_group8 3728876 103 - 9212921 UCUUCUGUCUGAUUGUCUGGGUCUGGGUCUGGACCUGGGCCCCGUGGCUGCAUAUUAAUUAUGGUA------UUUGAUUUGUGUUGAGCAACGGCUGCAAUUACCAUUU .........(((((((..(((((..(((....)))..)))))(((.((((((((..(((((.....------..))))))))))..))).)))...)))))))...... ( -30.40, z-score = -1.02, R) >consensus ___________AUUUUUUUGUUGUUGUUUUGGCCU___GCCCGGCGGCCGCAUAUUAAUUAUGAUACUCAUAUUUGAUUUGGCUUGGGCAAC_GCCGCAAUUACCAUUU ......................................(((((..(((((...(((((.((((.....)))).))))).)))))))))).................... (-13.64 = -15.00 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:58 2011