| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,883,007 – 2,883,070 |
| Length | 63 |
| Max. P | 0.949457 |
| Location | 2,883,007 – 2,883,070 |
|---|---|
| Length | 63 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 75.47 |
| Shannon entropy | 0.47585 |
| G+C content | 0.51146 |
| Mean single sequence MFE | -19.32 |
| Consensus MFE | -12.66 |
| Energy contribution | -13.42 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.949457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2883007 63 + 24543557 -CCAACUGGGGCCAUCUGGAGCACUUUCAGUGCCACAGAUGUACGGAUACGUGGGCAUACAUCA -((....)).((((((((..((((.....))))..))))).((((....)))))))........ ( -21.90, z-score = -1.98, R) >droEre2.scaffold_4784 2909895 63 + 25762168 -CCAGCUGGGGCCAUCUGGAGCACUUUCAGUGCCACAGAUGUACGGAUACGUGGGCAUACAUCA -...(.((..((((((((..((((.....))))..))))).((((....)))))))...)).). ( -22.20, z-score = -1.65, R) >droYak2.chr3L 15150053 63 - 24197627 -CCAACUGGGCCCAUCUGGAGCACUUUUAGUGCCACAGAUGUACGGAUACGUGGGCAUACAUCA -((....))(((((((((..((((.....))))..)))))..(((....)))))))........ ( -24.10, z-score = -2.97, R) >droSec1.super_2 2903148 63 + 7591821 -CCAACUGGGGCCAUCUGGAGCACUUUCCGUGCCACAGAUGUAUGGAUACGUGGGCAUACAUCA -((....)).((((((((..((((.....))))..))))).((((....)))))))........ ( -19.80, z-score = -0.70, R) >droSim1.chr3L 2436048 63 + 22553184 -CCAACUGGGGCCAUCUGGAGCACUUUCAGUGCCACAGAUGUACGGAUACGUGGGCAUACAUCA -((....)).((((((((..((((.....))))..))))).((((....)))))))........ ( -21.90, z-score = -1.98, R) >droGri2.scaffold_15110 19451261 54 + 24565398 GCUUAUUGCG-UAAAAUAAUAUAUCCUCGUAGCCAUCAAU---CGAAUGCAUUUAGCC------ (((...((((-(..............(((...........---))))))))...))).------ ( -6.03, z-score = -0.28, R) >consensus _CCAACUGGGGCCAUCUGGAGCACUUUCAGUGCCACAGAUGUACGGAUACGUGGGCAUACAUCA ..........((((((((..((((.....))))..))))).((((....)))))))........ (-12.66 = -13.42 + 0.75)
| Location | 2,883,007 – 2,883,070 |
|---|---|
| Length | 63 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 75.47 |
| Shannon entropy | 0.47585 |
| G+C content | 0.51146 |
| Mean single sequence MFE | -17.37 |
| Consensus MFE | -12.44 |
| Energy contribution | -13.52 |
| Covariance contribution | 1.07 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.790548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2883007 63 - 24543557 UGAUGUAUGCCCACGUAUCCGUACAUCUGUGGCACUGAAAGUGCUCCAGAUGGCCCCAGUUGG- ..(((.((((....)))).))).((((((..((((.....))))..))))))...........- ( -19.20, z-score = -1.32, R) >droEre2.scaffold_4784 2909895 63 - 25762168 UGAUGUAUGCCCACGUAUCCGUACAUCUGUGGCACUGAAAGUGCUCCAGAUGGCCCCAGCUGG- ..(((.((((....)))).))).((((((..((((.....))))..))))))...........- ( -19.20, z-score = -1.10, R) >droYak2.chr3L 15150053 63 + 24197627 UGAUGUAUGCCCACGUAUCCGUACAUCUGUGGCACUAAAAGUGCUCCAGAUGGGCCCAGUUGG- ........(((((((....)))..(((((..((((.....))))..)))))))))........- ( -22.00, z-score = -2.10, R) >droSec1.super_2 2903148 63 - 7591821 UGAUGUAUGCCCACGUAUCCAUACAUCUGUGGCACGGAAAGUGCUCCAGAUGGCCCCAGUUGG- ..(((.((((....)))).))).((((((..((((.....))))..))))))...........- ( -20.10, z-score = -1.18, R) >droSim1.chr3L 2436048 63 - 22553184 UGAUGUAUGCCCACGUAUCCGUACAUCUGUGGCACUGAAAGUGCUCCAGAUGGCCCCAGUUGG- ..(((.((((....)))).))).((((((..((((.....))))..))))))...........- ( -19.20, z-score = -1.32, R) >droGri2.scaffold_15110 19451261 54 - 24565398 ------GGCUAAAUGCAUUCG---AUUGAUGGCUACGAGGAUAUAUUAUUUUA-CGCAAUAAGC ------.(((.(.(((.....---..(((((.((....))...))))).....-.))).).))) ( -4.52, z-score = 1.25, R) >consensus UGAUGUAUGCCCACGUAUCCGUACAUCUGUGGCACUGAAAGUGCUCCAGAUGGCCCCAGUUGG_ ..(((.((((....)))).))).((((((..((((.....))))..))))))............ (-12.44 = -13.52 + 1.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:58 2011