Locus 598

Sequence ID dm3.chr2L
Location 4,223,835 – 4,223,886
Length 51
Max. P 0.939153
window795

overview

Window 5

Location 4,223,835 – 4,223,886
Length 51
Sequences 3
Columns 63
Reading direction reverse
Mean pairwise identity 81.32
Shannon entropy 0.24779
G+C content 0.59539
Mean single sequence MFE -21.03
Consensus MFE -12.14
Energy contribution -12.25
Covariance contribution 0.11
Combinations/Pair 1.07
Mean z-score -2.95
Structure conservation index 0.58
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.45
SVM RNA-class probability 0.939153
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 4223835 51 - 23011544
AACCAGAGCCAGGACUUGGAGCUCGG-----GGAGCAU-------CGAGCAUGGCGUUGGGAG
..((((.((((.(.((((..((((..-----.))))..-------))))).)))).))))... ( -21.50, z-score =  -2.96, R)
>droEre2.scaffold_4929 4297452 56 - 26641161
AACCAGUGCCAGGACUUGGAGCUCGGAGAAUGGAGCAU-------GGAGCAUGGUGUUGGGAG
..((((..(((.(.(((.(.((((........)))).)-------.)))).)))..))))... ( -21.80, z-score =  -3.39, R)
>droYak2.chr2L 4249401 63 - 22324452
AACGACAGCCAGGACUUGGAGCUCGGAGAAUGGAGCAUGGAGUUGGGAGCAUGGCGUUGGGAG
..((((.((((.(((((.(.((((........)))).).)))))(....).)))))))).... ( -19.80, z-score =  -2.50, R)
>consensus
AACCAGAGCCAGGACUUGGAGCUCGGAGAAUGGAGCAU_______GGAGCAUGGCGUUGGGAG
..(((..((((.(.(((...((((........))))..........)))).))))..)))... (-12.14 = -12.25 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:43 2011