| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,874,290 – 2,874,382 |
| Length | 92 |
| Max. P | 0.565599 |
| Location | 2,874,290 – 2,874,382 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 79.73 |
| Shannon entropy | 0.40570 |
| G+C content | 0.47563 |
| Mean single sequence MFE | -18.92 |
| Consensus MFE | -14.45 |
| Energy contribution | -14.45 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.565599 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2874290 92 + 24543557 ACAAAAUGUUGCAGCUGCCACAAUUUGCUGCACUUUCCGUUUUAUGCGAUUCCGUUUCGCGUUUC-CACUUCUG---------GCCU--UUCAUCCUGUCCUGU---- ..((((((.((((((...........)))))).....))))))((((((.......))))))..(-((....))---------)...--...............---- ( -16.30, z-score = -0.71, R) >droSim1.chr3L 2427196 92 + 22553184 ACAAAAUGUUGCAGCUGCCACAAUUUGCUGCACUUUCCGUUUUAUGCGAUUCCGUUUCGCGUUUC-CACUUCUG---------GCCU--UUCAUCCUGUCCUGU---- ..((((((.((((((...........)))))).....))))))((((((.......))))))..(-((....))---------)...--...............---- ( -16.30, z-score = -0.71, R) >droSec1.super_2 2894391 92 + 7591821 ACAAAAUGUUGCAGCUGCCACAAUUUGCUGCACUUUCCGUUUUAUGCGAUUCCGUUUCGCGUUUC-CACUUCUG---------GCCU--UUCAUCCUGUCCUGU---- ..((((((.((((((...........)))))).....))))))((((((.......))))))..(-((....))---------)...--...............---- ( -16.30, z-score = -0.71, R) >droYak2.chr3L 15141015 92 - 24197627 ACAAAAUGUUGCAGCUGCCACAAUUUGCUGCACUUUCCGUUUUAUGCGAUUCCGUUUCGCGUUUC-CACUUCUG---------GCCU--UUCAUCCUGUCCUGU---- ..((((((.((((((...........)))))).....))))))((((((.......))))))..(-((....))---------)...--...............---- ( -16.30, z-score = -0.71, R) >droEre2.scaffold_4784 2900997 92 + 25762168 ACAAAAUGUUGCAGCUGCCACAAUUUGCUGCACUUUCCGUUUUAUGCGAUUCCGUUUCGCGUUUC-CACUUCUG---------GCCU--UUCAUCCUGUCCUGU---- ..((((((.((((((...........)))))).....))))))((((((.......))))))..(-((....))---------)...--...............---- ( -16.30, z-score = -0.71, R) >droAna3.scaffold_13337 14079740 92 - 23293914 --AAAAUGUUGCAGCUGCCACAAUUUGCUGCACUUUCCGUUUUAUGCGAUUCCGUUUCGCGUUUC-CACUUCUG---------GCCU--UCCAUCCUGUCCUGUUU-- --((((((.((((((...........)))))).....))))))((((((.......))))))..(-((....))---------)...--.................-- ( -16.00, z-score = -0.93, R) >dp4.chrXR_group8 3713242 102 + 9212921 ---AAAUGUUGCAGCUGCCACAAUUUGCUGCACUUUCCGUUUUAUGCGAUUCCGUUUCGCGUUUC-CACUUUUGCGGCAGGCAGGCA--GGCAGGCCAUCCUGUCGGG ---......(((..(((((......(((((((...........((((((.......))))))...-......)))))))))))))))--((((((....))))))... ( -33.25, z-score = -0.76, R) >droWil1.scaffold_180698 344961 75 - 11422946 AAAAACUUUUGCAGCUGCCACAAUUUGCUGCACUUUCCGUUUUAUGCGAUUCCGUUUCGCGUUUC-CACUUUUUAU-------------------------------- .(((((...((((((...........))))))......)))))((((((.......))))))...-..........-------------------------------- ( -15.30, z-score = -2.41, R) >droVir3.scaffold_13049 15010907 86 + 25233164 AAUUGAUGUUGCAGCUGCCACAAUUUGCUGCACUUUCCGUUUUAUGCGACUUCGUUUCGCGUUUC-------CACUUU-----GGC-----CGGCCCAUCCUG----- ....((((.((((((...........))))))....(((....((((((.......))))))..(-------(.....-----)).-----)))..))))...----- ( -19.00, z-score = -0.69, R) >droMoj3.scaffold_6680 2890365 98 - 24764193 AAUUGAUGUUGCAGCUGCCACAAUUUGCUGCACUUUCCGUUUUAUGCGACUGCGUUUCGCGUUUCGCGAUUCCACUUU-----GGCAUCGGCAGACCAUCCUG----- ....((((.((((((...........))))))((..((.......((((..(((.....))).))))(((.((.....-----)).))))).))..))))...----- ( -25.30, z-score = -0.60, R) >droGri2.scaffold_15110 19440912 86 + 24565398 AAUUGAUGUUGCAGCUGCCACAAUUUGCUGCACUUUCCGUUUUAUGCGACUUCGUUUCGCGUUUC-------CACUUU-----GGC-----CAGCCCAUCCUG----- ....((((.((((((...........))))))((..(((....((((((.......))))))...-------.....)-----)).-----.))..))))...----- ( -17.80, z-score = -0.75, R) >consensus ACAAAAUGUUGCAGCUGCCACAAUUUGCUGCACUUUCCGUUUUAUGCGAUUCCGUUUCGCGUUUC_CACUUCUG_________GCCU__UUCAUCCUGUCCUGU____ .........((((((...........))))))...........((((((.......)))))).............................................. (-14.45 = -14.45 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:53 2011