| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,870,980 – 2,871,074 |
| Length | 94 |
| Max. P | 0.956380 |
| Location | 2,870,980 – 2,871,074 |
|---|---|
| Length | 94 |
| Sequences | 9 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 73.72 |
| Shannon entropy | 0.52261 |
| G+C content | 0.52643 |
| Mean single sequence MFE | -33.24 |
| Consensus MFE | -15.73 |
| Energy contribution | -16.19 |
| Covariance contribution | 0.46 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2870980 94 + 24543557 ---CAUUGUCCUUGGACUCCAUUUCCCAGGGACGCGUGUAGCUGCCGUUCGAGUUGGAAUUGGAGUUCGAAUUCGAGUUGGCGUUGCCGGCUGAGUU-------- ---....((((((((..........)))))))).((.(((((.(((..(((((((.((((....)))).)))))))...))))))))))........-------- ( -35.80, z-score = -2.23, R) >droSim1.chr3L 2423981 94 + 22553184 ---CAUUGUCCUUGGACUCCAUUUCCCAGGGACGCGUGUAGCUGCCGUUCGAGUUGGAAUUGGAGUUCGAAUUCGAGUUGGCGUUGCCGGCUGAGUU-------- ---....((((((((..........)))))))).((.(((((.(((..(((((((.((((....)))).)))))))...))))))))))........-------- ( -35.80, z-score = -2.23, R) >droSec1.super_2 2891144 94 + 7591821 ---CAUUGUCCUUGGACUCCAUUUCCCAGGGACGCGUGUAGCUGCCGUUCGAGUUGGAAUUGGAGUUCGAAUUCGAGUUGGCGUUGCCGGCUGAGUU-------- ---....((((((((..........)))))))).((.(((((.(((..(((((((.((((....)))).)))))))...))))))))))........-------- ( -35.80, z-score = -2.23, R) >droYak2.chr3L 15137585 85 - 24197627 ---CAUUGUCCUUGGACUCCAUUUCCCAGGGACGCGUGUAGCUGCCGUUCGAGUUGGAAUUGGAGUUCGAAUUCGAGUUGGCUGCGUU----------------- ---((((((((((((..........))))))))).)))..((.(((..(((((((.((((....)))).)))))))...))).))...----------------- ( -32.60, z-score = -2.64, R) >droEre2.scaffold_4784 2897564 94 + 25762168 ---CAUUGUCCUUGGACUCCAUCUCCCAGGGACGCGUGUAGCUGCCGUUCGAGUUGGAAUUGGAGUUCGAAUUCGAGUUGGCGUUGCCGGCUGAGUU-------- ---....((((((((..........)))))))).((.(((((.(((..(((((((.((((....)))).)))))))...))))))))))........-------- ( -35.80, z-score = -1.98, R) >droAna3.scaffold_13337 14076451 85 - 23293914 GACCCGAAUCCUUAGAUUCCAUUUCCCAAGGACGCGUGUAGCUGCCGUUUGAAUUGGAAUUGGAGUUUGAAUUCGGGUUGCUGGA-------------------- (((((((((..((((((((((.((((...(((((.((......))))))).....)))).)))))))))))))))))))......-------------------- ( -33.50, z-score = -3.94, R) >dp4.chrXR_group8 3708909 102 + 9212921 ---CGCUAUCCUUGGACUCCAUUUCCCAAGGACGUGUAUAGCUUCCGUUGGAGUUCGAAUUGGAGUUUGAGUUGGCGUUUGCUGCGUUGGCGUUGGCGUUGACGA ---(((((..((..(((((((.((((((((((.((.....)).))).)))).....))).)))))))..)).))))).......(((..(((....)))..))). ( -40.70, z-score = -3.46, R) >droWil1.scaffold_180698 341456 82 - 11422946 ---UGUUAUCCUUGGACUCCAUUUCCCAGGGACGUGUAUAGCUGCCGUUGGAAUUUGAAUUGGAGUUGGAAUUGGUGUUAGUACC-------------------- ---.....(((...(((((((.(((((((((..((.....))..)).)))).....))).))))))))))...((((....))))-------------------- ( -20.20, z-score = -0.27, R) >anoGam1.chr2L 5455075 94 - 48795086 ---GAUUCUCCUUGGUGUCCAUCUCCCAAGGACGCGUGUAGCUGCCGUUAGAGGUCGUCUGCGA---UGCAAUCACAUCGGUGGACCCGUUCGUGGCACU----- ---.....(((((((.(.......)))))))).((.....))(((((..((.((..(((..(((---((......)))).)..))))).))..)))))..----- ( -29.00, z-score = 0.10, R) >consensus ___CAUUGUCCUUGGACUCCAUUUCCCAGGGACGCGUGUAGCUGCCGUUCGAGUUGGAAUUGGAGUUCGAAUUCGAGUUGGCGGUGCCGGCUGAGUU________ ........(((((((..........))))))).((.....)).((((...(((((.((((....)))).)))))....))))....................... (-15.73 = -16.19 + 0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:52 2011