| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,862,032 – 2,862,122 |
| Length | 90 |
| Max. P | 0.572103 |
| Location | 2,862,032 – 2,862,122 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 73.17 |
| Shannon entropy | 0.47498 |
| G+C content | 0.58665 |
| Mean single sequence MFE | -26.76 |
| Consensus MFE | -18.64 |
| Energy contribution | -19.17 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.06 |
| Mean z-score | -0.74 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572103 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2862032 90 - 24543557 ----------------GCGGCGGCGGGGGAGGAGGAAUAGUCGGAGUCGGAGGAAACGGUUGUCAUUUAGUCCAG-UUUCCGAGGGGUUAAAUGCAGCCAGAGGCGG ----------------....((((...............))))..(((...(....)(((((.((((((..((..-........))..)))))))))))...))).. ( -24.76, z-score = -0.40, R) >droPer1.super_23 1614815 76 - 1662726 ------------------------GAAGGGGCCGGGCUCUCGGGAGUUGGAGGAAACGGUUGUCAUUUAGUCCAGUUUUUCGAGGGGUUAAAUGUAGCCA------- ------------------------........(.(((((....))))).).(....)(((((.((((((..((.(.....)...))..))))))))))).------- ( -23.00, z-score = -1.01, R) >droAna3.scaffold_13337 14066990 103 + 23293914 GCGGACCCGGGGACCCGGCUGGCACGGCAGGCCGGAGUC---AGAGUCGGAGGAAACGGUUGUCAUUUAGUCCAG-UUUCCGAGGGGUUAAAUGCAGCCAUAGGCGG ((.(((((((....))))(((((.(((....)))..)))---)).)))...(....)(((((.((((((..((..-........))..)))))))))))....)).. ( -41.10, z-score = -1.35, R) >droEre2.scaffold_4784 2888500 78 - 25762168 ----------------------GCGGAGGCGGGGGA------GGAGUCGGAGGAAACGGUUGUCAUUUAGUCCAG-UUUCCGAGGGGUUAAAUGCAGCCAUAGGCGG ----------------------((....))......------...(((...(....)(((((.((((((..((..-........))..)))))))))))...))).. ( -22.70, z-score = -1.11, R) >droYak2.chr3L 15128254 86 + 24197627 ----------------ACGGUGGCGAGGG-GAAGGA---GUCGGAGUCGGAGGAAACGGUUGUCAUUUAGUCCAG-UUUCCGAGGGGUUAAACGCAGCCAUAGGCGG ----------------.(.(((((..((.-.(.(((---.(..(.(.(((.(....)..))).).)..).)))..-)..))..(.(......).).))))).).... ( -20.60, z-score = 0.78, R) >droSim1.chr3L 2415068 93 - 22553184 -------------ACGGCGGCGGCGGGGGAGGAGUAGUAGUCGGAGUCGGAGGAAACGGUUGUCAUUUAGUCCAG-UUUCCGAGGGGUUAAAUGCAGCCAUAGGCGG -------------.((((.((.((.........)).)).))))..(((...(....)(((((.((((((..((..-........))..)))))))))))...))).. ( -28.40, z-score = -1.35, R) >consensus ________________GCGG_GGCGGGGGAGGAGGA_U_GUCGGAGUCGGAGGAAACGGUUGUCAUUUAGUCCAG_UUUCCGAGGGGUUAAAUGCAGCCAUAGGCGG .............................................(((...(....)(((((.((((((..((...........))..)))))))))))...))).. (-18.64 = -19.17 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:47 2011