| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,838,865 – 2,838,962 |
| Length | 97 |
| Max. P | 0.592019 |
| Location | 2,838,865 – 2,838,962 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 65.85 |
| Shannon entropy | 0.63913 |
| G+C content | 0.38880 |
| Mean single sequence MFE | -24.26 |
| Consensus MFE | -6.86 |
| Energy contribution | -7.19 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.592019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2838865 97 - 24543557 -----------AACAUUUUUGUAUCUCUCUAAAUGCAACAU--CUUGUUGCACAGAACGUGGGAUGCAAACAAGCGCAAGCAGAUAUAAACAGUUUUCGCUUUUAAUUUC -----------......(((((((((((((...((((((..--...)))))).)))....)))))))))).(((((.((((...........)))).)))))........ ( -24.40, z-score = -2.69, R) >droSec1.super_2 2859208 97 - 7591821 -----------AACAUUUUUGUAUCUCUCUAAAUGCAACAU--CUUGUUGCACAGAACGUGGGAUGCAAACAAGCGCAAGCAGAUAUAAACAGUUUUCGCUUUUAAUUUC -----------......(((((((((((((...((((((..--...)))))).)))....)))))))))).(((((.((((...........)))).)))))........ ( -24.40, z-score = -2.69, R) >droYak2.chr3L 15103131 97 + 24197627 -----------AACAUUUUUGUAUCUCUCUAAAUGCAACAU--CUUGUUGCACAAAACGUGGGAUGCAAACAAGCGCAAGCAGAUAUAAACAGUUUUCGCUUUUAAUUUC -----------......((((((((((......((((((..--...))))))........)))))))))).(((((.((((...........)))).)))))........ ( -24.24, z-score = -3.03, R) >droEre2.scaffold_4784 2864872 97 - 25762168 -----------AACAUUUUUGUAUCGCUCUAAAUGCAACAU--CUUGUUGCACAGAACGUGGGAUGCAAACAAGCGCAAGCAGAUAUAAACAGUUUUCGCUUUUAAUUUC -----------......((((((((.((((...((((((..--...)))))).)))....).)))))))).(((((.((((...........)))).)))))........ ( -22.50, z-score = -1.53, R) >droAna3.scaffold_13337 14044222 82 + 23293914 --------------------------CCCUAAAUGCAACAU--CUUGUUGCACAGAACGUGGCAUGCAAACAAGCGCCAGCGGAUAUAAACAGUUUUCGCUUUUAAUUUC --------------------------.......((((((..--...)))))).......((((..((......))))))(((((.((.....)).))))).......... ( -18.00, z-score = -0.82, R) >droMoj3.scaffold_6680 2844542 92 + 24764193 -----------AAAGAGUCCGUUCUUAUACGCAGUGAGCU------GCAUUAAAGCGUACAUGCAACAUGCAUGCAGCAUCUGGC-UGCUCAGUUUUCGCUUUUAAUUUG -----------.(((((....)))))....((((....))------))...((((((.((((((.....))))(((((.....))-)))...))...))))))....... ( -25.80, z-score = -0.94, R) >droVir3.scaffold_13049 14970109 108 - 25233164 AACUAUUUCGUGCAGAUCUGAUUCGUGU-UGCAUAAAGCUUUGCGCGUAUUUAAAAGCAAGCUUCGCUUGCUUGCCGCAUCUGUU-UGCACGGUUUUCGCUUUUAAUUUC .......((((((((((..(((.(((((-.((.....))...))))).......((((((((...)))))))).....))).)))-)))))))................. ( -30.50, z-score = -1.74, R) >consensus ___________AACAUUUUUGUAUCUCUCUAAAUGCAACAU__CUUGUUGCACAGAACGUGGGAUGCAAACAAGCGCAAGCAGAUAUAAACAGUUUUCGCUUUUAAUUUC .................................(((((((.....))))))).....................((....))............................. ( -6.86 = -7.19 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:44 2011