| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,833,497 – 2,833,591 |
| Length | 94 |
| Max. P | 0.691797 |
| Location | 2,833,497 – 2,833,591 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 74.64 |
| Shannon entropy | 0.48440 |
| G+C content | 0.48085 |
| Mean single sequence MFE | -16.32 |
| Consensus MFE | -6.64 |
| Energy contribution | -7.58 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.691797 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2833497 94 + 24543557 AGCACAUCGUUUUCCACACUUUUCCACAUUUCCCUAGUUGAAACUUAGUGC--CAGCUCGUGCCGGCAAGUGACCAAAUUCACUUUCCCCUCGUUC .((((...(((...(((...((((.((.........)).))))....))).--.)))..)))).((.((((((......)))))).))........ ( -15.60, z-score = -1.51, R) >droSim1.chr3L 2387338 94 + 22553184 CGCACAUCUCGUUUUCCACACUUCCACAUUUCCCUAGUUGAAACUUAGUGC--CAGCUCGUGCCGGCAAGUGACCAAAUUCACUUUCCCCUCGUUC .((((.....((.....))................(((((..((...))..--))))).)))).((.((((((......)))))).))........ ( -15.50, z-score = -1.34, R) >droSec1.super_2 2853933 96 + 7591821 CGCACAUCUCGUUUUCCACACUUCCACAUUUCCCUAGUUGAAACUUAGUGCGCCAGCUCGUGCCGGCAAGUGACCAAAUUCACUUUCCCCUCGUUC .((((.....((.....))..(((.((.........)).))).....))))(((.((....)).)))((((((......))))))........... ( -18.10, z-score = -1.88, R) >droYak2.chr3L 15097308 86 - 24197627 AGCACAUC--GUUUUCCA------CACAUUUCCCAAGUUGAAACUUAGUUC--CAGCUCGUGCCGGAAAGUGACCAAAUUCACUUUCCCCUCGUUC .((((...--((.....)------)..........(((((.(((...))).--))))).)))).(((((((((......)))))))))........ ( -20.50, z-score = -3.94, R) >droEre2.scaffold_4784 2859469 86 + 25762168 AGCACAUC--GUUUUCCA------CACAUUUCCCUAGUUGAAACUUAGUUC--CAGCUCGUGCCGGAAAGUGACCAAAUUCACUUUCCCCUCUUGC .((((...--((.....)------)..........(((((.(((...))).--))))).)))).(((((((((......)))))))))........ ( -20.40, z-score = -3.58, R) >droAna3.scaffold_13337 14039036 73 - 23293914 ----------------------AGCACCACCCCUUUCGUGCCCCUAAAUACCGUA-UUCGUGCCGGAAAGUUACCAAAUUCACUUUCGUUUUGAGU ----------------------.((((..........)))).............(-((((.....((((((..........))))))....))))) ( -7.80, z-score = 0.41, R) >consensus AGCACAUC__GUUUUCCA____UCCACAUUUCCCUAGUUGAAACUUAGUGC__CAGCUCGUGCCGGAAAGUGACCAAAUUCACUUUCCCCUCGUUC .((((..............................(((....))).(((......))).)))).((.((((((......)))))).))........ ( -6.64 = -7.58 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:41 2011