| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,818,034 – 2,818,129 |
| Length | 95 |
| Max. P | 0.627721 |
| Location | 2,818,034 – 2,818,129 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 94.41 |
| Shannon entropy | 0.10788 |
| G+C content | 0.43976 |
| Mean single sequence MFE | -21.73 |
| Consensus MFE | -19.15 |
| Energy contribution | -18.65 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627721 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2818034 95 + 24543557 ---UACUGUUUUUUAUGUCGUGCCAUUUCAGCGAAGCUCGGCAACAAAGCAUAAUAAAACUAAUUGUCUGCGCUUCGCUCUCACACACAGAUACACCC ---............(((((((.......((((((((..(....)...(((..((((......)))).)))))))))))......))).))))..... ( -20.52, z-score = -1.81, R) >droSim1.chr3L 2370536 95 + 22553184 ---UACUGUUUUUUAUGUCGUGCCAUUUCAGCGAAGCUCGGCAACAAAGCAUAAUAAAACUAAUUGUCUGCGCUUCGCUCUCACACACAGAUGCACCC ---...(((..(((.(((.(((.......((((((((..(....)...(((..((((......)))).)))))))))))..)))))).))).)))... ( -20.00, z-score = -0.89, R) >droSec1.super_2 2838487 95 + 7591821 ---UACUGUUUUUUAUGUCGUGCCAUUUCAGCGAAGCUCGGCAACAAAGCAUAAUAAAACUAAUUGUCUGCGCUUCGCUCUCACACACAGAUACACCC ---............(((((((.......((((((((..(....)...(((..((((......)))).)))))))))))......))).))))..... ( -20.52, z-score = -1.81, R) >droYak2.chr3L 15081340 97 - 24197627 -UGUACUGUUUUUUAUGUCGUGCCAUUUCAGCGAAGCUCGGCAACAAAGCAUAAUAAAACUAAUUGUCUGCGCUUCGCUCUCACACACAGAUACACCC -((((((((.......((.(((.......((((((((..(....)...(((..((((......)))).)))))))))))..))))))))).))))... ( -21.01, z-score = -1.44, R) >droEre2.scaffold_4784 2843584 95 + 25762168 ---UACUGUUUUUUAUGUCGUGCCAUUUCAGCGAAGCUCGGCAACAAAGCAUAAUAAAACUAAUUGUCUGCGCUUCGCUCUCACACACAGAUACACCC ---............(((((((.......((((((((..(....)...(((..((((......)))).)))))))))))......))).))))..... ( -20.52, z-score = -1.81, R) >droMoj3.scaffold_6680 2815531 96 - 24764193 UGUUGUUGCGUUUUAUGUCGUGCCAUUUCAGCGAAGCUCG-CAACAAAGCAUAAUAAAACUAAUUGUCUGCGCUUCGCUCUCGCACACACA-GCGCAC ......((((((...(((.((((......((((((((..(-((((((................)))).)))))))))))...))))))).)-))))). ( -27.79, z-score = -1.56, R) >consensus ___UACUGUUUUUUAUGUCGUGCCAUUUCAGCGAAGCUCGGCAACAAAGCAUAAUAAAACUAAUUGUCUGCGCUUCGCUCUCACACACAGAUACACCC ......(((......(((.(((.......((((((((..(....)...(((..((((......)))).)))))))))))....))))))...)))... (-19.15 = -18.65 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:40 2011