| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,810,843 – 2,810,899 |
| Length | 56 |
| Max. P | 0.999352 |
| Location | 2,810,843 – 2,810,899 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 61.94 |
| Shannon entropy | 0.58223 |
| G+C content | 0.29129 |
| Mean single sequence MFE | -12.90 |
| Consensus MFE | -7.46 |
| Energy contribution | -8.28 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.81 |
| SVM RNA-class probability | 0.999352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2810843 56 + 24543557 ----UUAGUUAUUCUAAUGCUGGUUGUGAUCAUAUUUUGUUAUGACUGGCAUAUAUUUCU---- ----............((((..((..(((.((.....)))))..))..))))........---- ( -14.30, z-score = -3.38, R) >droSec1.super_2 2831441 56 + 7591821 ----UUAGUUAUUCUAUGGCUGGUUAUAAUCAUAUUUUGUUAUGACUGGCAUUUAUUUCU---- ----..............((..(((((((.((.....)))))))))..))..........---- ( -13.10, z-score = -3.46, R) >droSim1.chr3L 2363402 56 + 22553184 ----UUAGUUAUUCUAUGGCUGGUUAUAAUCAUAUUUUGUUAUGACUGGCAUUUAUUUCU---- ----..............((..(((((((.((.....)))))))))..))..........---- ( -13.10, z-score = -3.46, R) >droGri2.scaffold_15110 19352845 64 + 24565398 GUAUGUGAUUGAUCAAACGGGGUAUACACAAGUUUGUUUCAAAAGAAAGCUUCUGAAUAUGCUU ((((((..((((.(((((..(.......)..)))))..)))).(((.....)))..)))))).. ( -11.10, z-score = -0.60, R) >consensus ____UUAGUUAUUCUAAGGCUGGUUAUAAUCAUAUUUUGUUAUGACUGGCAUUUAUUUCU____ ..................((((((((((((........)))))))))))).............. ( -7.46 = -8.28 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:37 2011