| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,798,741 – 2,798,836 |
| Length | 95 |
| Max. P | 0.575747 |
| Location | 2,798,741 – 2,798,836 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 92.93 |
| Shannon entropy | 0.11262 |
| G+C content | 0.47648 |
| Mean single sequence MFE | -27.68 |
| Consensus MFE | -22.64 |
| Energy contribution | -22.20 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.575747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2798741 95 + 24543557 GGUAAAAUAAAUAAAACGCCAAAGAAAGAUGGCACCGCGCAGAUACACGGCGUGCGCGUGUGUGAGUGAGUAUCUGUGUGUG--AGAUAGUGCGAGA .(((.............((((........)))).((((((((((((.((.((..(....)..))..)).))))))))))).)--......))).... ( -26.50, z-score = -1.32, R) >droEre2.scaffold_4784 2824037 95 + 25762168 GGCAAAAUAAAUAAAACGUUAAAGAAAGAUGACAUCGCGGAGAUACACGGUGCUCGCGUGUGUGAGUGAGUAUCUGUGUGCG--AGAUAGUGCGAGA .(((.............((((........)))).((((....(((((.(((((((((........)))))))))))))))))--).....))).... ( -25.40, z-score = -1.58, R) >droSec1.super_2 2819455 97 + 7591821 GGUAAAAUAAAUAAAACGCCAAAGAAAGAUGGCACCGCGCAGAUACACGGCGUGCGCGUGUGUGAGUGAGUAUCUGUGUGUGUGAGAUAGUGCGAGA .(((.............((((........))))(((((((((((((.((.((..(....)..))..)).))))))))))).)).......))).... ( -27.60, z-score = -1.44, R) >droSim1.chr3L 2351012 97 + 22553184 GGUAAAAUAAAUAAAACGCCAAAGAAAGAUGGCACCGCGCAGAUACACGCCGUGCGCGUGUGUGAGUGAGUAUCUGUGUGUGUGAGAUAGUGCGAGA .(((.............((((........))))(((((((((((((.(((((..(....)..)).))).))))))))))).)).......))).... ( -31.20, z-score = -2.90, R) >consensus GGUAAAAUAAAUAAAACGCCAAAGAAAGAUGGCACCGCGCAGAUACACGGCGUGCGCGUGUGUGAGUGAGUAUCUGUGUGUG__AGAUAGUGCGAGA .(((.............((((........))))..(((((((((((.((...((((....))))..)).)))))))))))..........))).... (-22.64 = -22.20 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:31 2011