| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,786,203 – 2,786,301 |
| Length | 98 |
| Max. P | 0.895039 |
| Location | 2,786,203 – 2,786,301 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 80.50 |
| Shannon entropy | 0.37519 |
| G+C content | 0.39290 |
| Mean single sequence MFE | -17.80 |
| Consensus MFE | -10.57 |
| Energy contribution | -11.82 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.895039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2786203 98 - 24543557 UAUCGCACCUGACUUAGCGACAUUCGGGUGCAGAAUCAGAUAGAGAUACGAUAUAGCGAGAUACAUACAUAUUGUAAAACGAUAUAC-AACCCGAGAAC ((((((((((((...........))))))))...............((((((((..............))))))))....))))...-........... ( -18.54, z-score = -1.82, R) >droSim1.chr3L 2339440 98 - 22553184 UAUCGCACCUGACUUAGCGACAGUCGGGUGCAGAAUCAGAUAGAGAUACGAUAUAGCGAGAUACAUACAUAUUGUAAAACGAUACAC-AACCCGAGAAC ((((((((((((((.......))))))))))...............((((((((..............))))))))....))))...-........... ( -23.34, z-score = -3.41, R) >droSec1.super_2 2806737 98 - 7591821 UAUCGCACCUGACUUAGCGACAGUCGGGUGCAGAAUCAGAUAGAGAUACGAUAUAGCGAGAUAACUACAUAUUGUAAAACGAUACAC-AACCCGAGAAC ((((((((((((((.......))))))))))...............((((((((....((....))..))))))))....))))...-........... ( -24.20, z-score = -3.60, R) >droYak2.chr3L 15047437 99 + 24197627 UAACGCACCGGACUUAGCGACAUUCGGGUGCUAAAUCAGUUAGAGAUACGAUAUAGCGAGAUACAUACAUAUUGUAAAACGAUACACAAAACCGAGAAC ...(((..........)))...(((((.(((((.(((.((.......))))).)))))...........(((((.....))))).......)))))... ( -16.80, z-score = -1.27, R) >droEre2.scaffold_4784 2811383 99 - 25762168 UAACGCACCUGACUUAGCGACAUUCGGGUGCAAAAUCAGAUAGAGAUACGAUAUAGCGAGAUACAUACAUAUUGUAAAACGAUACACAAAACCGAGAAC ....((((((((...........))))))))...............((((((((..............))))))))....................... ( -16.24, z-score = -1.95, R) >droWil1.scaffold_180698 255568 85 + 11422946 AAAAAUAACAAAUUGAACAAAGUUAAGGCUUAGAAAUGGC---AGAUG----AUAGCCGGAUG-AUACAUAUUGUAAAACGAUAAAGAUAAAC------ .......((((..((....((((....)))).....((((---.....----...))))....-...))..))))..................------ ( -7.70, z-score = -0.53, R) >consensus UAACGCACCUGACUUAGCGACAUUCGGGUGCAGAAUCAGAUAGAGAUACGAUAUAGCGAGAUACAUACAUAUUGUAAAACGAUACAC_AAACCGAGAAC ....((((((((...........))))))))...............((((((((..............))))))))....................... (-10.57 = -11.82 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:28 2011