| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,748,953 – 2,749,034 |
| Length | 81 |
| Max. P | 0.543268 |
| Location | 2,748,953 – 2,749,034 |
|---|---|
| Length | 81 |
| Sequences | 7 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 68.24 |
| Shannon entropy | 0.55388 |
| G+C content | 0.47199 |
| Mean single sequence MFE | -20.37 |
| Consensus MFE | -11.51 |
| Energy contribution | -10.95 |
| Covariance contribution | -0.57 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.75 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.543268 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2748953 81 - 24543557 UUCGAGGGGG----UCCAACCUUUCCACCUCGAAGGUUUAAAUUAUUUUUUUUCGGGCUCCCUGCCGUGGUUGUUAAUUGCUCGA .(((((((((----((((((((((.......))))))).(((......)))...))))))))....(..((.....))..))))) ( -22.60, z-score = -0.76, R) >droSim1.chr3L 2303602 79 - 22553184 UUCGAGGGGG----UCCAACCUUUCCACCUCGAAGGUUUAAAUUA--UUUUUUCGGGCUCCCUGCCGUGGUUGUUAAUUGCUCGA .(((((((((----((((((((((.......))))))).(((...--...))).))))))))....(..((.....))..))))) ( -22.60, z-score = -0.73, R) >droSec1.super_2 2773476 79 - 7591821 UUCGAGGGGG----UCCAACCUUUCCACCUCGAAGGUUUAAAUUA--UUUUUUCGGGCUCCCUGCCGCGGUUGUUAAUUGCUCGA .(((((((((----((((((((((.......))))))).(((...--...))).))))))))....(((((.....))))))))) ( -24.00, z-score = -0.98, R) >droYak2.chr3L 15014210 78 + 24197627 UUCGAGGGGG----UCCAACCUUUCCACCUCGAAGGUUUAAAUUA---UUUUUCGGGCUCCCUGCCGUGGUUGUUAAUUGCUCGA .(((((((((----((((((((((.......))))))).(((...---.)))..))))))))....(..((.....))..))))) ( -22.40, z-score = -0.67, R) >droEre2.scaffold_4784 2775976 78 - 25762168 UUCGAGGGGG----UCCAACCUUUCCACCUCGAAGGUUUAAAUUA---UUUUUCGGGCUCCCUGCCGUUGUUGUUAAUUGCUCGA .(((((((((----((((((((((.......))))))).(((...---.)))..)))))))).((.((((....)))).)))))) ( -23.20, z-score = -1.47, R) >dp4.chrXR_group5 137911 69 - 740492 UUCGAAAGGAGGUUUCCGAAUAUUCCUCUUCGGCUCUGUAAAC----ACUGGCUAAUUGCCCCGAAAUGUCUA------------ ((((...((((....(((((........)))))))))......----...(((.....))).)))).......------------ ( -13.90, z-score = -0.33, R) >droPer1.super_58 131778 69 + 410386 UUCGAAAGGAGGUUUCCGAAUAUUCCUCUUCGGCUCUGUAAAC----ACUGGCUAAUUGCCCCGAAAUGUCUA------------ ((((...((((....(((((........)))))))))......----...(((.....))).)))).......------------ ( -13.90, z-score = -0.33, R) >consensus UUCGAGGGGG____UCCAACCUUUCCACCUCGAAGGUUUAAAUUA__UUUUUUCGGGCUCCCUGCCGUGGUUGUUAAUUGCUCGA ((((((((((.............))).))))))).....................(((.....)))................... (-11.51 = -10.95 + -0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:22 2011