| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,726,137 – 2,726,248 |
| Length | 111 |
| Max. P | 0.753574 |
| Location | 2,726,137 – 2,726,248 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.19 |
| Shannon entropy | 0.39774 |
| G+C content | 0.34955 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -17.03 |
| Energy contribution | -18.47 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.753574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2726137 111 + 24543557 GACUGCCUUUAAUUUACUCUUAUUUGCCUUUUUUUUUCGUUAUAAGCCAAUUAAAAGUGAAGUUAUUUGAGCAACAUUUUUCACAGUGCACAGUAGUGCAUAGUUCUCUUU ...((((..(((((((((.(((.(((.(((.............))).))).))).)))).)))))...).))).........((.((((((....)))))).))....... ( -17.82, z-score = -0.43, R) >droEre2.scaffold_4784 2752478 106 + 25762168 GACUGCACUUAAUUUACUCUGUUUAGGCUCU-UUU---GUAAUGAGCCAACUUACGGAGGAGUUAUUUCAGCAACAUUUUUCACAGUGCACGUAAGUGCAUAGUUUUCCU- (.(((....((((((.((((((...(((((.-...---.....))))).....))))))))))))...))))..........((.((((((....)))))).))......- ( -30.50, z-score = -3.29, R) >droYak2.chr3L 14990964 108 - 24197627 GACUGCAUUUAAUUUACUCGUUUUUGGCUUUACUU---GUAAGGAGUCAAUUUAAAGAGAAGUUAUUUAAGGAAAAUUGUUUACAGUGCACGUAAGUGCAUACCUCUCUGU ..((.....((((((.(((....((((((((....---....))))))))......))))))))).....)).............((((((....)))))).......... ( -23.50, z-score = -0.99, R) >droSec1.super_2 2751612 102 + 7591821 ------GACUGACUUACUCCUUUUUGCCUCUUUUU---GUUAUAAGCCAAUUAAAGGUGGAGUUAUUUGAGCAACAUUUUCAACAGUGCACAGAAGUGCAUAGUUCUCUUU ------...((.((((.....(((..(((.(..((---(........)))..).)))..))).....))))))........(((.((((((....)))))).)))...... ( -19.40, z-score = -0.01, R) >consensus GACUGCAUUUAAUUUACUCUUUUUUGCCUCUUUUU___GUAAUAAGCCAAUUAAAAGAGAAGUUAUUUGAGCAACAUUUUUCACAGUGCACAGAAGUGCAUAGUUCUCUUU .........((((((.((((((.(((((((.............)))))))...))))))))))))....................((((((....)))))).......... (-17.03 = -18.47 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:18 2011