| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,178,369 – 4,178,476 |
| Length | 107 |
| Max. P | 0.530225 |
| Location | 4,178,369 – 4,178,476 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 81.34 |
| Shannon entropy | 0.34415 |
| G+C content | 0.54902 |
| Mean single sequence MFE | -38.67 |
| Consensus MFE | -23.28 |
| Energy contribution | -22.76 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.530225 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4178369 107 + 23011544 UUCGAGGUCAACCCUG-GA-GUCUGCAGACCCUCGGGACCUUCAAUGAUAAACCCCGAGGGCUAAGAGUUUUAUGGCUCCUGGGUCG-GCGACUCCGGCGGCAUAUAAAG ...........(((((-((-(((.((.((((((((((................))))))).(((.(((((....))))).)))))).-)))))))))).))......... ( -41.09, z-score = -1.75, R) >droSim1.chr2L 4134133 103 + 22036055 UUCGAGGUCAACCCUGAGA-GUCCACAGACCCUCGGGACCUUCAAUGAUAAACCCUGUGGGCUAAGAGUUUUAUGGCCCCUGGGUCG-GCGACUCCGGC-----AUAAAG .(((..(((...((((((.-(((....))).))))))..............((((.(.((((((.........))))))).))))..-..)))..))).-----...... ( -34.90, z-score = -0.97, R) >droSec1.super_5 2277910 103 + 5866729 UUCGAGGUCAACCCUGGGA-GUCUACGGACCCUCGGGACCUCCAAUGAUAAACCCUGUGGGCUAAGAGUUUUAUGGCCCCUGGGUCG-GCGAUUCCGGC-----AUAAAG ...(((((...(((.(((.-(((....)))))).))))))))...........((.(.((((((.........))))))).))((((-(.....)))))-----...... ( -38.40, z-score = -1.02, R) >droYak2.chr2L 4205128 102 + 22324452 UUCGAGGUCAACCGUG-GA-GUCUGCAGACCCUUGGGACAUCCAAUGAUAAACCCUGAGGGCUAAGAGUUUUAUGGCUCCAGGGUCG-CCGACUCCGGC-----AUAAAG .....((....))(((-((-(((.((.(((((..(((..(((....)))...)))((.((((((.........))))))))))))))-).)))))).))-----...... ( -35.10, z-score = -1.30, R) >droEre2.scaffold_4929 4246074 102 + 26641161 UUCGAGGUCAACCCUG-GA-GUCUGGAGACCCUCGGGACGUUCAAUGAUAAACCCUGAGGGCUAAGAGUUUUAUGGCUCCAGGGUCG-GCGACUCCGAC-----AUAAAG .(((..(((.((((((-((-(((...((.((((((((..(((........)))))))))))))...........)))))))))))..-..)))..))).-----...... ( -41.74, z-score = -2.80, R) >droAna3.scaffold_12943 752984 104 - 5039921 UUCGAGGUCAACCCCACGAAGUCAGGGGGGUCUCUAAGGGCAUGAUAAC--CCCCCGAGGGCUAAGAGUUUUAUGGCCAAAAGGCUAUGCGACUCUGGG----CAUAAAG ((((.((......)).))))....(((((((.((.........))..))--)))))....(((.((((((.(((((((....))))))).)))))).))----)...... ( -40.80, z-score = -2.29, R) >consensus UUCGAGGUCAACCCUG_GA_GUCUGCAGACCCUCGGGACCUUCAAUGAUAAACCCUGAGGGCUAAGAGUUUUAUGGCCCCAGGGUCG_GCGACUCCGGC_____AUAAAG .(((..(((.................((.((((((((................))))))))))....((....(((((....))))).)))))..)))............ (-23.28 = -22.76 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:39 2011