| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,722,089 – 2,722,184 |
| Length | 95 |
| Max. P | 0.623695 |
| Location | 2,722,089 – 2,722,184 |
|---|---|
| Length | 95 |
| Sequences | 9 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 66.90 |
| Shannon entropy | 0.65036 |
| G+C content | 0.52599 |
| Mean single sequence MFE | -30.16 |
| Consensus MFE | -12.01 |
| Energy contribution | -12.51 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.63 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623695 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2722089 95 - 24543557 --------------ACCAUAAUCCUGACCAACGAGGAAUUGCUGAGGGAGCAGCAGCGCAAGAUCGACGAGUUGCAGAGGCAAUUGCAGCGAUCGCAACAGGAACUGCA --------------.......(((((.((.....))..((((((......)))))).((..(((((..(((((((....)))))).)..)))))))..)))))...... ( -27.60, z-score = -0.87, R) >apiMel3.Group1 17637463 108 + 25854376 ACUUCUUUUCUGAAUUUACAAUCGUUGUAAAGAUGAUAAAAUUUCGUGAAACGAAUUUUUCGGAGCGCGACACGCGUCGGUGUUUUCA-CGAUUGUAGUCCGUGUUUCA ..(((.((((((((......((((((.....)))))).....)))).)))).)))......(((((((((((((.((((.((....))-))))))).)).)))))))). ( -24.80, z-score = 0.14, R) >droGri2.scaffold_15110 8217766 92 - 24565398 --------------ACGAUCAUACUG---AACGAGGAGCUGUUGCGUCGACAGCAACGUAAAAUCGAUGAGCUGCAGCGAAAGCUGCAACGCUCCCAGCAAGAGUUGCA --------------.((.((.....)---).)).(.((((.(((((((((.............)))))((((((((((....))))))..))))...)))).)))).). ( -34.22, z-score = -2.54, R) >droMoj3.scaffold_6680 9715799 92 - 24764193 --------------ACCAUCAUUCAG---AACGACGAGCUGCUACGUCGGCAGCAGCGCAAAAUCGACGAGUUGCAGCGGCAGCUGCAGCGCUCCCAGCAGGAGCUGCA --------------............---........((((((.(....).))))))(((..........((((((((....))))))))(((((.....)))))))). ( -36.00, z-score = -1.04, R) >droEre2.scaffold_4784 2748445 95 - 25762168 --------------ACCAUAAUCCUGACCAACGAGGAAUUGCUCAGGGAGCAGCAGCGCAAGAUCGACGAGCUGCAGAGGCAAUUGCAGCGAUCGCAACAGGAGCUGCA --------------.......((((((.(((.......))).)))))).(((((..(....)..(((...(((((((......)))))))..)))........))))). ( -30.70, z-score = -1.03, R) >droYak2.chr3L 14986960 95 + 24197627 --------------ACCAUAAUCCUGACCAACGAGGAAUUGCUCAGGGAGCAGCAGCGUAAGAUUGACGAACUGCAAAGGCAAUUGCAGCGAUCGCAGCAGGAGCUGCA --------------.......((((((.(((.......))).)))))).(((((..(((.......)))..((((....((....)).((....)).))))..))))). ( -28.60, z-score = -0.80, R) >droSec1.super_2 2747540 95 - 7591821 --------------ACCAUAAUCCUGACCAACGAGGAGUUGCUGAGAGAGCAGCAGCGCAAGAUCGACGAGCUGCAGAGGCAAUUGCAGCGAUCGCAACAGGAGCUGCA --------------.......(((((.....(((.(.(((((((......))))))).)....))).((((((((((......)))))))..)))...)))))...... ( -31.40, z-score = -1.21, R) >droSim1.chr3L 2278265 95 - 22553184 --------------ACCAUAAUCCUGACCAACGAGGAGUUGCUGAGAGAGCAGCAGCGCAAGAUCGACGAGCUGCAGAGGCAAUUGCAGCGAUCGCAACAGGAGCUGCA --------------.......(((((.....(((.(.(((((((......))))))).)....))).((((((((((......)))))))..)))...)))))...... ( -31.40, z-score = -1.21, R) >triCas2.ChLG3 6553149 90 - 32080666 --------------ACAAAAAUCCC----AAGAAGAAAUCG-UACGAGAGCAGCAAAGACAAAUCGAGGAGUUGCAACGCGAGUUGACUCUCUCGAAGUUGCGGCUCCA --------------...........----............-...(.((((.((((.......(((((((((..((((....)))))))).)))))..)))).))))). ( -26.70, z-score = -2.09, R) >consensus ______________ACCAUAAUCCUGACCAACGAGGAAUUGCUGAGAGAGCAGCAGCGCAAGAUCGACGAGCUGCAGAGGCAAUUGCAGCGAUCGCAGCAGGAGCUGCA ....................................(((((((......(((((..((......))....)))))...)))))))(((((.............))))). (-12.01 = -12.51 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:17 2011